YRC Public Data Repository - Protein Structure Prediction

Protein:	Tim9a-PA, FBpp03...
Organism:	Drosophila melanogaster
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tim9a-PA, FBpp03....

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	101.0	[0..3]	[93..116]
gi\|115969099, gi... - gi\|115969099\|ref\|XP_001188197.1\| PREDICTED: similar to small zinc finger-like protein [Strongylocent...	89.0	[0..20]	[93..384]
gi\|5107178, gi\|7... - gi\|74096149\|ref\|NP_001027735.1\| small zinc finger-like protein [Ciona intestinalis], gi\|5107178\|gb\|A...	89.0	[0..6]	[93..2]
TIM9_MESCR - Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM...	87.0	[0..1]	[81..9]
gi\|149390691 - gi\|149390691\|gb\|ABR25363.1\| mitochondrial import inner membrane translocase subunit tim9 [Oryza sati... TIM9_ORYSJ - Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9... TIM9_ORYSA - Mitochondrial import inner membrane translocase subunit Tim9 - Oryza sativa (Rice)	85.0	[0..1]	[79..9]
ORFP:10389 - YHR005C-A, Contig c37 119194-119475 TIM10 - Essential protein of the mitochondrial intermembrane space, forms a complex with Tim9p (TIM10 comple... gi\|190405788 - gi\|190405788\|gb\|EDV09055.1\| mitochondrial import inner membrane translocase subunit TIM10 [Saccharom... TIM10_YEAST - Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae (strain AT...	85.0	[0..3]	[86..8]
TIM9_ORYSA, IM09... - (Q9XGX7) Mitochondrial import inner membrane translocase subunit Tim9, (Q9XGX7) Mitochondrial import...	84.0	[0..1]	[79..9]
TIM9_ZYGBA - Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=...	84.0	[0..2]	[87..4]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	84.0	[0..6]	[88..7]
gi\|57099561 - gi\|57099561\|ref\|XP_533175.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	84.0	[0..10]	[93..4]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTPENIAI DQLDKDQIKT FSDFLMSYNK LSETCFTDCI RDFTTRDVKD SEEKCSLNCM  60
   61 EKYLKMNQRV SQRFQEFQVI AHENALAMAQ KTGKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2bskA
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits