YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4407-PB
Organism:	Drosophila melanogaster
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4407-PB.

Description	E-value	Query Range	Subject Range
gi\|220945812, gi... - gi\|220955650\|gb\|ACL90368.1\| CG4407-PA [synthetic construct], gi\|220945812\|gb\|ACL85449.1\| CG4407-PA [... CG4407-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4407 (CG4407, FBgn0030431). It is a protein...	295.0	[0..1]	[294..29]
gi\|21226985, gi\|... - gi\|21226985\|ref\|NP_632907.1\| hypothetical protein MM_0883 [Methanosarcina mazei Go1], gi\|20905301\|gb...	232.0	[0..3]	[294..160]
FAD1_CAEBR - Probable FAD synthase OS=Caenorhabditis briggsae GN=flad-1 PE=3 SV=1 gi\|157748915 - gi\|157748915\|ref\|XP_001678171.1\| Hypothetical protein CBG00973 [Caenorhabditis briggsae AF16]	228.0	[0..9]	[290..252]
CE38215 - FAD-1 like protein status:Partially_confirmed UniProt:Q22017 protein_id:CAI70410.1	227.0	[0..9]	[290..240]
gi\|34099827 - gi\|34099827\|gb\|AAQ57202.1\| adenosine 5' phosphosulfate reductase [Populus alba x Populus tremula]	221.0	[0..20]	[270..43]
gi\|73668105, gi\|... - gi\|73668105\|ref\|YP_304120.1\| hypothetical protein Mbar_A0559 [Methanosarcina barkeri str. Fusaro], g...	221.0	[0..3]	[293..160]
gi\|51457940 - gi\|51457940\|gb\|AAU03359.1\| adenylyl-sulfate reductase [Lycopersicon esculentum]	218.0	[0..16]	[269..43]
gi\|12831474 - gi\|12831474\|gb\|AAB05871.2\| PAPS-reductase-like protein [Catharanthus roseus]	217.0	[0..18]	[269..44]
APR3_ARATH - 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2	216.0	[0..10]	[268..37]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNECRKNITN ITNITANNSI LCAKSISKKH LFLEKRSMSD RSENSKDVAK GQDISNPMEL  60
   61 TAEDRLAIEE RQNKAFAFFA ETLQIYGVEE LIFCFNGGKD CTVLLDLLMR YLRQENISSG 120
  121 DIPMLYIKSG DSFPEIDEFV ERCVRNYRVQ LVQYEGTLKE ALTHMSSDMP RIKAVFVGSR 180
  181 NTDPYCQHLA PMQPTDNDWP PMMRLNPLLE WSYHDVWHYI HLNSVPYCSL YDRGYTSIGN 240
  241 RANTVPNPHL RRTDAECECG SNSDAVCSCD LGGYRPAWEL QDATMERAGR LPRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	2goyA
Description:	No description for 2goyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits