YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr11B-PA
Organism:	Drosophila melanogaster
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr11B-PA.

Description	E-value	Query Range	Subject Range
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	151.0	[0..69]	[168..78]
AGAP009875-PA - CPR77: cuticular protein RR-1 family (CPR77)\|protein_coding\|3R:44651286:44651883:-1\|gene:AGAP009875 gi\|158298840, gi... - gi\|58391952\|ref\|XP_318995.2\| ENSANGP00000014836 [Anopheles gambiae str. PEST], gi\|55236096\|gb\|EAA144...	144.0	[0..59]	[166..11]
gi\|223671192, gi... - gi\|223671192\|tpd\|FAA00548.1\| TPA: putative cuticle protein [Bombyx mori], gi\|12862599\|dbj\|BAB32485.1...	138.0	[0..5]	[176..1]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	134.0	[0..58]	[174..71]
gi\|21627378, gi\|... - gi\|24653001\|ref\|NP_725147.1\| CG30045-PA [Drosophila melanogaster], gi\|21627378\|gb\|AAM68675.1\| CG3004...	134.0	[0..59]	[165..170]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPLLTVAL VLFGFSSAIL AGRLSQRYLP TPQASQLHYH GVSGQGQARP GAGHSFGGGS  60
   61 SYQRQQQPQI PIVRSDYNSD ANGNYNFGFD TGNGIHRDET GEFRGGWPHG SLGVQGSYSY 120
  121 TGDDGKQYTV NYTADKNGFH AEGAHLPVSP SVPAAPAGRS SYGAGGSGYR GSASSHVPAA 180
  181 APATRYLPPG YRQRRHY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.086186
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits