YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0306531, p24...
Organism:	Drosophila melanogaster
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0306531, p24....

Description	E-value	Query Range	Subject Range
gi\|109078264, gi... - gi\|109078266\|ref\|XP_001085489.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	246.0	[0..16]	[208..31]
TMED7 - transmembrane emp24 protein transport domain containing 7 gi\|114601202, gi... - gi\|114601204\|ref\|XP_001147833.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	245.0	[0..16]	[208..31]
TMED7_RAT - Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1	243.0	[0..16]	[208..33]
gi\|73970483 - gi\|73970483\|ref\|XP_858610.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	240.0	[0..20]	[208..37]
gi\|45361367, gi\|... - gi\|45361367\|ref\|NP_989261.1\| transmembrane emp24 domain containing 3 [Xenopus (Silurana) tropicalis]...	237.0	[0..7]	[208..17]
gi\|53130058 - gi\|53130058\|emb\|CAG31437.1\| hypothetical protein [Gallus gallus]	237.0	[0..17]	[208..27]
gi\|52354659 - gi\|52354659\|gb\|AAH82914.1\| MGC86295 protein [Xenopus laevis]	235.0	[0..7]	[208..17]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQIVVFAV ALMMHCISAV EFTFDLADNA VDCFYEEIKK NSSAYFEFQV SAGGQLDVDV  60
   61 TLKDPQGKVI YSLEKATFDS HQFVAETTGV YTACFGNQFS AFSHKIVYVD FQVGEEPALP 120
  121 GVDEHATVLT QME

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.958
Match:	2yrlA
Description:	No description for 2yrlA was found.

Predicted Domain #2

Region A:
Residues: [134-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSQAIHKGL NDILDAQTHH RLREAQGRKR AEDLNQRVMV WSSLETAAVI VIGLVQIMVL  60
   61 RNFFTDRKPS QAHYGRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits