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View Structure Prediction Details

Protein: dy-PA
Organism: Drosophila melanogaster
Length: 699 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dy-PA.

Description E-value Query
Range
Subject
Range
gi|385209 - gi|385209|gb|AAA28490.1| transmembrane protein
474.0 [0..21] [699..19]

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Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHQQQQQQQ QQQQQQQHKQ VRYRNLRRNV EIGAKKIWLP LIIFLSLQVA LVCADDVEVV  60
   61 KAIAGGPDDE LTIALGDHEN ELDQMAQESE QEQQAQAQQQ QQQQQQQQQQ QQQQQHQQLP 120
  121 QIQMQLPQSV PKVQVHYQHN MPQPPPNVAL TMRNNHQNIP LSFGQPFGPP PPPGAQFYKG 180
  181 PPPPQLQQRP QPPPQLQLQV QPQQQQQQQQ QHTQQQGQQQ QVQVPDLSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [230-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSSNNEIWA APVQDMPKIV SLDVKCEKNG MKVFVQFDKP FNGIVFSKGH YSNMNCVHLP  60
   61 SGLGRSSASF DIGLHECGTA GNTDNYGQGY GHE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [323-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSTGAGTYF ENIIVIQYDP QVQEVWDQAR KLRCTWHDQY EKSVTFRPFP VDMLDVVRAD  60
   61 FAGDNVGCWM QIQVGKGPWA SEVSGLVKIG QTMTMVLAIK DDDSKFDMLV RNCVAHDGKR 120
  121 APIQLVDQRG CVTRPKLMSR FTKIKNFGAS ASVLSYAHFQ AFKFPDSMEV HFQCTIQICR 180
  181 YHCPEQCSAE TNLQDVHHLQ VGPESQYGPP PQLHVDAYHV ASAIGKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [550-699]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDERRVQRRA RAVAEPQVGL NRIIKVVSSG DLTFAIDDQA GGNGSSTNGA NSGVDRSPQT  60
   61 MVFPLREEGL ICMTTPGFAI TLIVLLGILV TSCLTSAVLY VRLRPFSSFA GSAKERAVAF 120
  121 TNPQLAPLPV IQLPSPADLQ GTLSKKRAMS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle