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View Structure Prediction Details

Protein: RpII215-PA
Organism: Drosophila melanogaster
Length: 1887 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpII215-PA.

Description E-value Query
Range
Subject
Range
gi|54643878|gb|E... - GA13798-PA [Drosophila pseudoobscura], RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878, gi|... - gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura], gi|125983594|ref|XP_001...
1986.0 [0..1] [1885..1]

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Predicted Domain #1
Region A:
Residues: [1-1566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPTDSKAP LRQVKRVQFG ILSPDEIRRM SVTEGGVQFA ETMEGGRPKL GGLMDPRQGV  60
   61 IDRTSRCQTC AGNMTECPGH FGHIDLAKPV FHIGFITKTI KILRCVCFYC SKMLVSPHNP 120
  121 KIKEIVMKSR GQPRKRLAYV YDLCKGKTIC EGGEDMDLTK ENQQPDPNKK PGHGGCGHYQ 180
  181 PSIRRTGLDL TAEWKHQNED SQEKKIVVSA ERVWEILKHI TDEECFILGM DPKYARPDWM 240
  241 IVTVLPVPPL AVRPAVVMFG AAKNQDDLTH KLSDIIKANN ELRKNEASGA AAHVIQENIK 300
  301 MLQFHVATLV DNDMPGMPRA MQKSGKPLKA IKARLKGKEG RIRGNLMGKR VDFSARTVIT 360
  361 PDPNLRIDQV GVPRSIAQNL TFPELVTPFN IDRMQELVRR GNSQYPGAKY IVRDNGERID 420
  421 LRFHPKSSDL HLQCGYKVER HLRDDDLVIF NRQPTLHKMS MMGHRVKVLP WSTFRMNLSC 480
  481 TSPYNADFDG DEMNLHVPQS METRAEVENI HITPRQIITP QANKPVMGIV QDTLTAVRKM 540
  541 TKRDVFITRE QVMNLLMFLP TWDAKMPQPC ILKPRPLWTG KQIFSLIIPG NVNMIRTHST 600
  601 HPDEEDEGPY KWISPGDTKV MVEHGELIMG ILCKKSLGTS AGSLLHICFL ELGHDIAGRF 660
  661 YGNIQTVINN WLLFEGHSIG IGDTIADPQT YNEIQQAIKK AKDDVINVIQ KAHNMELEPT 720
  721 PGNTLRQTFE NKVNRILNDA RDKTGGSAKK SLTEYNNLKA MVVSGSKGSN INISQVIACV 780
  781 GQQNVEGKRI PYGFRKRTLP HFIKDDYGPE SRGFVENSYL AGLTPSEFYF HAMGGREGLI 840
  841 DTAVKTAETG YIQRRLIKAM ESVMVNYDGT VRNSVGQLIQ LRYGEDGLCG ELVEFQNMPT 900
  901 VKLSNKSFEK RFKFDWSNER LMKKVFTDDV IKEMTDSSEA IQELEAEWDR LVSDRDSLRQ 960
  961 IFPNGESKVV LPCNLQRMIW NVQKIFHINK RLPTDLSPIR VIKGVKTLLE RCVIVTGNDR1020
 1021 ISKQANENAT LLFQCLIRST LCTKYVSEEF RLSTEAFEWL VGEIETRFQQ AQANPGEMVG1080
 1081 ALAAQSLGEP ATQMTLNTFH FAGVSSKNVT LGVPRLKEII NISKKPKAPS LTVFLTGGAA1140
 1141 RDAEKAKNVL CRLEHTTLRK VTANTAIYYD PDPQRTVISE DQEFVNVYYE MPDFDPTRIS1200
 1201 PWLLRIELDR KRMTDKKLTM EQIAEKINVG FGEDLNCIFN DDNADKLVLR IRIMNNEENK1260
 1261 FQDEDEAVDK MEDDMFLRCI EANMLSDMTL QGIEAIGKVY MHLPQTDSKK RIVITETGEF1320
 1321 KAIGEWLLET DGTSMMKVLS ERDVDPIRTS SNDICEIFQV LGIEAVRKSV EKEMNAVLQF1380
 1381 YGLYVNYRHL ALLCDVMTAK GHLMAITRHG INRQDTGALM RCSFEETVDV LMDAAAHAET1440
 1441 DPMRGVSENI IMGQLPKMGT GCFDLLLDAE KCRFGIEIPN TLGNSMLGGA AMFIGGGSTP1500
 1501 SMTPPMTPWA NCNTPRYFSP PGHVSAMTPG GPSFSPSAAS DASGMSPSWS PAHPGSSPSS1560
 1561 PGPSMS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [1567-1887]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYFPASPSVS PSYSPTSPNY TASSPGGASP NYSPSSPNYS PTSPLYASPR YASTTPNFNP  60
   61 QSTGYSPSSS GYSPTSPVYS PTVQFQSSPS FAGSGSNIYS PGNAYSPSSS NYSPNSPSYS 120
  121 PTSPSYSPSS PSYSPTSPCY SPTSPSYSPT SPNYTPVTPS YSPTSPNYSA SPQYSPASPA 180
  181 YSQTGVKYSP TSPTYSPPSP SYDGSPGSPQ YTPGSPQYSP ASPKYSPTSP LYSPSSPQHS 240
  241 PSNQYSPTGS TYSATSPRYS PNMSIYSPSS TKYSPTSPTY TPTARNYSPT SPMYSPTAPS 300
  301 HYSPTSPAYS PSSPTFEESE D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

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