YRC Public Data Repository - Protein Structure Prediction

Protein:	rtv-PA, FBpp0312...
Organism:	Drosophila melanogaster
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rtv-PA, FBpp0312....

Description	E-value	Query Range	Subject Range
gi\|108882135, gi... - gi\|157167625\|ref\|XP_001655277.1\| hypothetical protein AaeL_AAEL002438 [Aedes aegypti], gi\|108882135\|...	220.0	[0..15]	[151..14]
gi\|54643021, gi\|... - gi\|54643021\|gb\|EAL31765.1\| GA12667-PA [Drosophila pseudoobscura], gi\|125981413\|ref\|XP_001354710.1\| G...	216.0	[0..1]	[141..1]
gi\|116122797, gi... - gi\|118789906\|ref\|XP_317897.3\| ENSANGP00000020005 [Anopheles gambiae str. PEST], gi\|116122797\|gb\|EAA1...	207.0	[0..24]	[123..13]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFTSLLLAV IFLISLVSID GLLRRCYQCR SRGELGSCKD PFTFNATDVE QEPGVAAIPC  60
   61 ASGWCGKVIE GGGTYAIDDY DLAIQRMCVQ RGPDDNMDRC ADTIYNYKKV YMCFCQGDLC 120
  121 NGARSWSSAP QMILITMLPL LGSWLLQRMR N

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1nysA
Description:	Type II activin receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits