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View Structure Prediction Details

Protein: FBpp0312031, Rpt3-PA
Organism: Drosophila melanogaster
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0312031, Rpt3-PA.

Description E-value Query
Range
Subject
Range
gi|194115603, gi... - gi|195174295|ref|XP_002027914.1| GL27100 [Drosophila persimilis], gi|194115603|gb|EDW37646.1| GL2710...
gi|54643817, gi|... - gi|54643817|gb|EAL32560.1| GA14216 [Drosophila pseudoobscura pseudoobscura], gi|125983472|ref|XP_001...
gi|125983472|ref... - GA14216-PA [Drosophila pseudoobscura], GA14216 [Drosophila pseudoobscura pseudoobscura]
347.0 [0..1] [413..1]

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Predicted Domain #1
Region A:
Residues: [1-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYNMDVLIP EKDELSDLKL KDAHSSLDEL DMEDLYVRYK KLQKTLEFIE VQEEYIKDEQ  60
   61 RNLKKEYLHA QEEVKRIQSV PLVIGQFLEA VDQNTGIVGS TTGSNYYVRI LSTIDRELLK 120
  121 PSASVALHKH SNALVDVLPP EADSSISMLQ PDEKPDVSYA DIGGMDMQKQ EIREAVELPL 180
  181 THFELYKQIG IDPPRGVLMY GPPGCGKTML AKAVAHHTTA SFIRVVGSEF VQKYLGEGPR 240
  241 MVRDVFRLAK ENAPAIIFID EIDAIATKRF DAQTGADREV QRILLELLNQ MDGFDQTTNV 300
  301 KVIMATNRAD TLDPALLRPG RLDRKIEFPL PDRRQKRLVF STITSKMNLS EDVDLEEFVA 360
  361 RPDKISGADI NAICQEAGMH AVRENRYIVL AKDFEKGYKN NIKKDEQEHE FYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.522879
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle