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View Structure Prediction Details

Protein: FBpp0312053, FBp...
Organism: Drosophila melanogaster
Length: 349 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0312053, FBp....

Description E-value Query
Range
Subject
Range
gi|76636005 - gi|76636005|ref|XP_590836.2| PREDICTED: similar to nucleoporin 98kD isoform 1 [Bos taurus]
307.0 [0..20] [344..25]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVFICLLAT ICACNATFLS LLGGGGGGGG GGGSKTTYNV IATPSSGGGG GGGGGGGGGG  60
   61 GHGYSYAQGG GGGHGYAQGH GYGHGHGGSP QIIKVILQEG QGYSNAGGSA GGIVSSEGHG 120
  121 YSHGHGHGYA SGHGSYGGQQ AQIYKIIEQA PAPVPAPAPV PIPISIPAPA PPAAPIAYH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [180-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AASGSNGYSY DQGHSHSYGQ SYASGHGYGG GASFDTQQFN AILPQIIQLV LQEDSFGGGG  60
   61 GGSADVAAIN GQLINTFGSK GKAIILKADQ AQGAFFKSGH VVQRGTLKVM RVQEQQQSQS 120
  121 AGGSKGGWGS GGGAISGGWS SGGGAASGGW SSGGGAASGG WSSGGPPSAW 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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