YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24640953, gi\|...
Organism:	Drosophila melanogaster
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24640953, gi|....

Description	E-value	Query Range	Subject Range
gi\|20151815 - gi\|20151815\|gb\|AAM11267.1\| RH19667p [Drosophila melanogaster]	330.0	[0..1]	[275..1]
NNRE_RAT - NAD(P)H-hydrate epimerase OS=Rattus norvegicus GN=Apoa1bp PE=2 SV=1	293.0	[0..15]	[275..14]
gi\|71682679, gi\|... - gi\|72533474\|gb\|AAI00935.1\| Apolipoprotein A-I binding protein [Homo sapiens], gi\|71682683\|gb\|AAI0093...	290.0	[0..18]	[275..17]
NNRE_MOUSE - NAD(P)H-hydrate epimerase OS=Mus musculus GN=Apoa1bp PE=1 SV=1	290.0	[0..15]	[275..14]
gi\|55588372 - gi\|55588372\|ref\|XP_513889.1\| PREDICTED: similar to Apolipoprotein A-I binding protein isoform 3 [Pan...	289.0	[0..18]	[275..17]
gi\|109017366 - gi\|109017366\|ref\|XP_001116635.1\| PREDICTED: similar to apolipoprotein A-I binding protein isoform 1 ...	285.0	[0..15]	[275..14]
NNRE_PIG - NAD(P)H-hydrate epimerase OS=Sus scrofa GN=APOA1BP PE=2 SV=1	283.0	[0..14]	[275..13]
PPOX1_ARATH - Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 ...	276.0	[0..12]	[275..45]
NNRE_BOVIN - NAD(P)H-hydrate epimerase OS=Bos taurus GN=APOA1BP PE=2 SV=1	274.0	[0..18]	[275..17]

Back

Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLICRRFGS SLRPIARTLH PLLASKIIEA QRSPLKNKRF YAGKRMDLKY LNQKEAIAVD  60
   61 QELFNDYKFS VDQLMELAGL SCAHAVAKCF PAEKHPRILV CCGPGNNGGD GLVAARHLAL 120
  121 MGYTPTIYYP KPTAKPLFEN LSHQCQQMDI CDVKECPSVE SAARDYDLIL DALFGFSFKP 180
  181 PVRADFVAVV ELMQQTKLPI ASVDIPSGWD VEKGKLTECD VEPALLISLT APKLCARQFR 240
  241 GEHHYLGGRF VPPALQRKYE LNLPVYPGNE LCVKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	2dg2A
Description:	No description for 2dg2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits