YRC Public Data Repository - Protein Structure Prediction

Protein:	amx-PA, FBpp0298282
Organism:	Drosophila melanogaster
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amx-PA, FBpp0298282.

Description	E-value	Query Range	Subject Range
gi\|54642892, gi\|... - gi\|54642892\|gb\|EAL31636.1\| GA11421-PA [Drosophila pseudoobscura], gi\|125981151\|ref\|XP_001354582.1\| G...	297.0	[0..1]	[284..1]
TM2D3_MOUSE - TM2 domain-containing protein 3 OS=Mus musculus GN=Tm2d3 PE=2 SV=1	257.0	[0..101]	[284..67]
gi\|157820247, gi... - gi\|157820247\|ref\|NP_001099737.1\| TM2 domain containing 3 [Rattus norvegicus], gi\|149057087\|gb\|EDM084...	257.0	[0..101]	[284..67]
gi\|73951178 - gi\|73951178\|ref\|XP_536173.2\| PREDICTED: similar to BBP-like protein 2 isoform a [Canis familiaris]	254.0	[0..99]	[284..51]
gi\|114659227 - gi\|114659227\|ref\|XP_001143945.1\| PREDICTED: similar to TM2 domain containing 3 isoform 4 [Pan troglo...	253.0	[0..99]	[284..51]
TM2D3 - TM2 domain containing 3	253.0	[0..99]	[284..51]
gi\|109082559 - gi\|109082559\|ref\|XP_001086067.1\| PREDICTED: similar to BBP-like protein 2 isoform 2 isoform 3 [Macac...	253.0	[0..99]	[284..51]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQRQCIVV NMRSAIVLIM IFVLTGIRNS ETASGGNQMD LSDSKGDHKD NSNASNGNGN  60
   61 ANDNEVYVPP LVSSMVAKSG GGAGGLLDNI TAYSSSSSSS SSNGNNNMLC PYDKETPCDR 120
  121 LQFPCIRCNY NHGCIYGRDL NVTCEVINNV QCLGERSFQR QMNCRYCYQT EMWQQSCGQR 180
  181 SSCNSATDKL FRTNCTVHHD VLCLGNRSFT RNLRCNWTQG YRWSTALLIS LTLGGFGADR 240
  241 FYLGHWQEGI GKLFSFGGLG VWTIIDVLLI SMHYLGPADG SLYI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.976
Match:	1oahA
Description:	Cytochrome c nitrite reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits