YRC Public Data Repository - Protein Structure Prediction

Protein:	Dip1-PA
Organism:	Drosophila melanogaster
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dip1-PA.

Description	E-value	Query Range	Subject Range
gi\|6934284 - gi\|6934284\|gb\|AAF31698.1\|AF218858_1 Dorsal interacting protein 1 [Drosophila melanogaster]	361.0	[0..1]	[175..1]
gi\|125981843, gi... - gi\|54643237\|gb\|EAL31981.1\| GA13675 [Drosophila pseudoobscura pseudoobscura], gi\|125981843\|ref\|XP_001... gi\|125981843\|ref... - GA13675-PA [Drosophila pseudoobscura], GA13675 [Drosophila pseudoobscura pseudoobscura]	181.0	[0..1]	[172..1]
gi\|66509590 - gi\|66509590\|ref\|XP_392677.2\| PREDICTED: similar to CG6654-PA [Apis mellifera]	47.0	[0..4]	[89..7]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFESFCRT CGNECLESLS IYNECAQVLD QMVPIADMLA SCLPASLPPL DPEDDYPKQI  60
   61 CRICVKKLSM AYEFSHQWLG AHGEFNVALK FEQRRRRSQA SKSQSHTQTQ THPVEPKNEQ 120
  121 LPTVLAEAVS TKRAATPTNE FSSDSGPAFK CGFCGECFYT EKACKFHLKF SHKDL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.25
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits