YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG12065-PB, CG12...
Organism: Drosophila melanogaster
Length: 687 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12065-PB, CG12....

Description E-value Query
Range
Subject
Range
gi|54643060, gi|... - gi|54643060|gb|EAL31804.1| GA11369-PA [Drosophila pseudoobscura], gi|125981491|ref|XP_001354749.1| G...
770.0 [0..57] [687..1]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERRSHIQM APPPPPPKPN KSQTANGNGI GNGTGIGTGT GNGTLPNGNK NYNKIVAVQD  60
   61 QEPLAQNSSG VQRSQSPPRT EQVVMTPRGK TA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSTVILIERK LVDEINDRVH VAGGDHTGII INKDTVAGQK SASKAAALSL EFRVFLVSAN  60
   61 TGKHSQESRT LRFWFRDWLT NEEKQAHIAQ DFFKELVSPQ DFPRDYVGFI KKIMKLLQHG 120
  121 YSEIQSIEIE LRILEETSAP PSRPPRDGYI IYCYGDCNRK FEEALMAQRK TVSLEESQFE 180
  181 SPPLTQEKVL ELIEQAYPNP VSPEDLAKDY GWSEQDVLLV IKSLQERGLI KSMEYNAYTR 240
  241 IHHEDKEIKV VKQMPTIASN KQP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [356-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIAIITAQYC EKLAVDAMLE NKETFVRYTT VDSDPNLTNS LRKSKKKRRF GESNVYTLGN  60
   61 IGAHRIVSTK LPSVGSNREA MTATGNTTTR LLGTFQKVDY VFIVGVAGGV PHYTDYKKHV 120
  121 RLGDVVISYV DKQRALISNS KEKPYVYLYK SGEDVKTYFP VNDSLQQIAE SLQANMQVKR 180
  181 PWEDYLNQAQ QALAQKTDAD FNRPDARTDK LFMNIGNNEV IEVAHPIAAD EVDGVNRLRL 240
  241 HLGPIGSGRD LVRSDELRTQ FARKYGLLAT DVEMSSVLDS IIGNCRESFI LVKGIADYKD 300
  301 GTSTRKWQNF AAISAASVVK SVICGMDAPT NV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1zosA
Description: No description for 1zosA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle