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View Structure Prediction Details

Protein: Cp38-PA, Cp38-PB
Organism: Drosophila melanogaster
Length: 306 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp38-PA, Cp38-PB.

Description E-value Query
Range
Subject
Range
gi|54643034, gi|... - gi|54643034|gb|EAL31778.1| GA10847 [Drosophila pseudoobscura pseudoobscura], gi|125981439|ref|XP_001...
gi|54643034|gb|E... - GA10847-PA [Drosophila pseudoobscura], GA10847 [Drosophila pseudoobscura pseudoobscura]
282.0 [0..60] [279..62]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSTYIWAL AACLIACASA NYGSSQGYGP ESGSGASDGG ADAASAAAAA AGGAGGAGGE  60
   61 YGGANAGAGA LESGADAAGV AQAGQSSYGS DQNIPYKPVN TKGNTLTSSI TYPQNKGEIL 120
  121 IHRPAPIIVK RPPTKVLVNH PPLVVKPAPV VLHKPPAIVL RKVYVKHHPR RVKVEPVFVN 180
  181 VVKPPAEKYF VNENKQGYGQ GSQSHGHGHG HGGHGHGHSG HGHGGHGAGP HGPGPHDGGR 240
  241 ALPAYASGAD SAAASAGYQL LQSGNQGLSA LANIAGEREG PYGPAPSHQH YSAGPAGHGG 300
  301 YAAPAY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle