YRC Public Data Repository - Protein Structure Prediction

Protein:	Cp36-PA
Organism:	Drosophila melanogaster
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp36-PA.

Description	E-value	Query Range	Subject Range
gi\|103109, gi\|77... - gi\|7726\|emb\|CAA28870.1\| chorion protein S36 [Drosophila melanogaster], sp\|P07182\|CH36_DROME CHORION ...	452.0	[0..1]	[284..1]
CH36_DROVI - Chorion protein S36 OS=Drosophila virilis GN=Cp36 PE=3 SV=1	450.0	[0..1]	[284..1]
gi\|57904766, gi\|... - gi\|57904772\|gb\|AAW59001.1\| chorion protein s36 [Drosophila americana], gi\|57904766\|gb\|AAW58998.1\| ch...	424.0	[0..11]	[284..1]
gi\|57904774 - gi\|57904774\|gb\|AAW59002.1\| chorion protein s36 [Drosophila ezoana]	423.0	[0..11]	[284..1]
gi\|194105457, gi... - gi\|195165037\|ref\|XP_002023352.1\| GL20317 [Drosophila persimilis], gi\|194105457\|gb\|EDW27500.1\| GL2031... gi\|54643033\|gb\|E... - GA13239-PA [Drosophila pseudoobscura], GA13239 [Drosophila pseudoobscura pseudoobscura] gi\|54643033, gi\|... - gi\|54643033\|gb\|EAL31777.1\| GA13239 [Drosophila pseudoobscura pseudoobscura], gi\|125981437\|ref\|XP_001...	422.0	[0..1]	[284..1]
gi\|46948543, gi\|... - gi\|46948543\|gb\|AAT07183.1\| chorion protein 36 [Drosophila innubila], gi\|46948539\|gb\|AAT07181.1\| chor...	363.0	[0..11]	[230..1]
gi\|46948775 - gi\|46948775\|gb\|AAT07299.1\| chorion protein 36 [Drosophila falleni]	362.0	[0..11]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLGLWFGIL AIAATPLVSA NYGPAGGHGH GHGHGQYLSG PNAGLEEYVN VASGGNQQAA  60
   61 NQIASQAEIQ PTPEEARRLG RVQAQLQALN ADPNYQKLKN SEDIAESLAE TNLASNIRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKIKVVSPQF VDQHLFRSLL VPSGHNNHQV IATQPLPPII VHQPGAPPAH VNSGPPTVVR  60
   61 GNPVIYKIKP SVIYQQEVIN KVPTPLSLNP VYVKVYKPGK KIEAPLAPVV APVYSQPREY 120
  121 SQPQGYGSAG AASSAAGAAS SADGNAYGNE APLYNSPAPY GQPNY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits