YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4593-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4593-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|17946406 - gi\|17946406\|gb\|AAL49236.1\| RE66240p [Drosophila melanogaster]	251.0	[0..1]	[209..1]
gi\|109086042 - gi\|109086042\|ref\|XP_001110749.1\| PREDICTED: similar to coiled-coil domain containing 25 isoform 1 [M...	250.0	[0..1]	[209..195]
gi\|114619641 - gi\|114619641\|ref\|XP_519679.2\| PREDICTED: similar to CCDC25 protein [Pan troglodytes]	248.0	[0..1]	[209..262]
gi\|125983598\|ref... - GA18284-PA [Drosophila pseudoobscura], GA18284 [Drosophila pseudoobscura pseudoobscura] gi\|54643880, gi\|... - gi\|54643880\|gb\|EAL32623.1\| GA18284 [Drosophila pseudoobscura pseudoobscura], gi\|125983598\|ref\|XP_001...	242.0	[0..1]	[209..1]
gi\|73993916 - gi\|73993916\|ref\|XP_850388.1\| PREDICTED: similar to coiled-coil domain containing 25 [Canis familiari...	231.0	[0..1]	[209..49]
AGAP003621-PA - Coiled-coil domain-containing protein 25\|protein_coding\|2R:40592296:40593043:1\|gene:AGAP003621 gi\|58384644, gi\|... - gi\|58384644\|ref\|XP_313381.2\| ENSANGP00000011838 [Anopheles gambiae str. PEST], gi\|55241098\|gb\|EAA088...	230.0	[0..1]	[209..1]
gi\|55729516\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55729516 - gi\|55729516\|emb\|CAH91489.1\| hypothetical protein [Pongo abelii]	228.0	[0..1]	[209..1]
gi\|148233774, gi... - gi\|46250305\|gb\|AAH68711.1\| MGC81148 protein [Xenopus laevis], gi\|148233774\|ref\|NP_001084524.1\| hypot...	227.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYFKSNVV QPPAMLYMGR DKHENEELIR WGWPEDVWFH VHDLSSAHVY LRLRKGQTID  60
   61 DIPTDVLVDA AQLCKANSIQ GNKVNNLEVV YTMWENLKKT PDMEPGQVAY HNEKAVRRIR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.585027
Match:	PF05670.4
Description:	No description for PF05670.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEKRINEIVN RLNRTKTEEE HPDFRGLREA RDAAERQDQK KIQRERREQE KEAAKQRELE  60
   61 AELRSYASLQ KSENMRTNYD AGNESDDFM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.09691
Match:	1dg3A
Description:	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits