YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311459, RpL...
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311459, RpL....

Description	E-value	Query Range	Subject Range
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	283.0	[0..1]	[178..1]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	283.0	[0..1]	[178..1]
gi\|94405641 - gi\|94405641\|ref\|XP_978758.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	269.0	[0..1]	[181..1]
gi\|28189725 - gi\|28189725\|dbj\|BAC56477.1\| similar to ribosomal protein L17 [Bos taurus]	267.0	[0..1]	[179..1]
gi\|119576757, gi... - gi\|88943956\|ref\|XP_935739.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 5 [Homo s...	264.0	[0..1]	[171..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYSRESDN VAKSCKARGP NLRVHFKNTH ETAQAIKRMP LRRAQRYLKA VIDQKECVPF  60
   61 RRFNGGVGRC AQAKQWKTTQ GRWPKKSAEF LLQLLRNAEA NADCKGLDAD RLVVHHIQVN 120
  121 RAQCLRRRTY RAHGRINPYM SSPCHVEVIL TEKEELVSKA TDDEPAKKKL SKKKLQRQKE 180
  181 KMLRSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits