YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3192-PB, CG319...
Organism:	Drosophila melanogaster
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3192-PB, CG319....

Description	E-value	Query Range	Subject Range
NDUB8_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 P...	225.0	[0..1]	[166..1]
gi\|54643570\|gb\|E... - GA16565-PA [Drosophila pseudoobscura], GA16565 [Drosophila pseudoobscura pseudoobscura] gi\|194108680, gi... - gi\|195168812\|ref\|XP_002025224.1\| GL13370 [Drosophila persimilis], gi\|194108680\|gb\|EDW30723.1\| GL1337... gi\|125982982, gi... - gi\|54643570\|gb\|EAL32313.1\| GA16565 [Drosophila pseudoobscura pseudoobscura], gi\|125982982\|ref\|XP_001...	223.0	[0..1]	[175..1]
NDUB8_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pongo pygmaeus GN=NDUF...	221.0	[0..1]	[166..1]
gi\|57107249 - gi\|57107249\|ref\|XP_534992.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	220.0	[0..1]	[166..1]
gi\|124000217, gi... - gi\|124000217\|gb\|ABM87617.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [synthetic c... NDUFB8 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	220.0	[0..1]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFVKTVCL AQKLCAANPV VARQAIRSMA GWNKDYKPGP YPQTEKERLA AAKKYYLLPE  60
   61 EYKPYADDGL GYGDYPKLGY GLGVEAKDSY YPWDYPEHKR NQHEPISADH DLYSEDRWSQ 120
  121 AEPPRYSNAY YFACFLGVMS GCLALYYWLD DKKMYRPVAA KQYPSPGVKH YTFEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.537602
Match:	PF05821.2
Description:	No description for PF05821.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits