YRC Public Data Repository - Protein Structure Prediction

Protein:	cv-PA, FBpp03094...
Organism:	Drosophila melanogaster
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cv-PA, FBpp03094....

Description	E-value	Query Range	Subject Range
gi\|125981077\|ref... - GA11617-PA [Drosophila pseudoobscura], GA11617 [Drosophila pseudoobscura pseudoobscura] gi\|125981077, gi... - gi\|54642854\|gb\|EAL31598.1\| GA11617 [Drosophila pseudoobscura pseudoobscura], gi\|125981077\|ref\|XP_001...	348.0	[0..1]	[257..1]
gi\|55243510, gi\|... - gi\|58380834\|ref\|XP_310821.2\| ENSANGP00000022752 [Anopheles gambiae str. PEST], gi\|55243510\|gb\|EAA451...	308.0	[0..23]	[250..150]
TWSG1 - twisted gastrulation homolog 1 (Drosophila)	285.0	[0..7]	[220..6]
gi\|109121565 - gi\|109121565\|ref\|XP_001099214.1\| PREDICTED: similar to twisted gastrulation [Macaca mulatta] gi\|90079225 - gi\|90079225\|dbj\|BAE89292.1\| unnamed protein product [Macaca fascicularis] gi\|114672282 - gi\|114672282\|ref\|XP_001138675.1\| PREDICTED: twisted gastrulation [Pan troglodytes]	285.0	[0..7]	[220..6]
TWSG1_PONAB - Twisted gastrulation protein homolog 1 OS=Pongo abelii GN=TWSG1 PE=2 SV=1 TWSG1_PONPY - Twisted gastrulation protein homolog 1 precursor - Pongo pygmaeus (Orangutan)	282.0	[0..7]	[220..6]
gi\|91079240 - gi\|91079240\|ref\|XP_971016.1\| PREDICTED: similar to protein kinase N2 [Tribolium castaneum]	282.0	[0..1]	[251..5286]
gi\|73962202 - gi\|73962202\|ref\|XP_547668.2\| PREDICTED: similar to twisted gastrulation [Canis familiaris]	281.0	[0..6]	[220..5]
gi\|115497310, gi... - gi\|76651994\|ref\|XP_617448.2\| PREDICTED: similar to twisted gastrulation [Bos taurus], gi\|115497310\|r...	281.0	[0..6]	[220..5]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIWRSLTVG TIVLLAIVCF YGTVESCNEV VCASIVSKCM LTQSCKCELK NCSCCKECLK  60
   61 CLGKNYEECC SCV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.379	g.63.1	Mollusk pheromone
View	Download	0.365	a.4.1	Homeodomain-like
View	Download	0.358	a.4.1	Homeodomain-like
View	Download	0.342	d.68.5	C-terminal domain of ProRS
View	Download	0.302	a.60.12	DNA polymerase beta-like, second domain

Predicted Domain #2

Region A:
Residues: [74-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELCPKPNDTR NSLSKKSHVE DFDGVPELFN AVATPDEGDS FGYNWNVFTF QVDFDKYLKG  60
   61 PKLEKDGHYF LRTNDKNLDE AIQERDNIVT VNCTVIYLDQ CVSWNKCRTS CQTTGASSTR 120
  121 WFHDGCCECV GSTCINYGVN ESRCRKCPES KGELGDELDD PMEEEMQDFG ESMGPFDGPV 180
  181 NNNY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.161151
Match:	PF04668.3
Description:	No description for PF04668.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits