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View Structure Prediction Details

Protein: CG3309-PA
Organism: Drosophila melanogaster
Length: 634 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3309-PA.

Description E-value Query
Range
Subject
Range
gi|73968841 - gi|73968841|ref|XP_538313.2| PREDICTED: similar to CG3309-PA [Canis familiaris]
612.0 [0..13] [632..53]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADARIKQM APSLDTTERE REHQNVDATN SNSEPSASDW VNFSQWMHCF CVVTFDLNLG  60
   61 QALEHVYPPA FMPSDQEVSN ICYMAFPDSN SGCMGDTKFH MRLRCTTRRD SLPGYNAECS 120
  121 PALRQDGSHY WGFVYFRQKR DANLPRGYFQ KSFIIITRLP FFNLYYDILS QLAPRYFEEG 180
  181 TDVLRLASEQ INRQWPGLRV GKPLQLPLLD CSYQICIPRT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSRKSTADG GIAGGAVESP PAMAACPAAK VLASVNEIEL FRSLDFVMEQ LYTLWELVIT  60
   61 AEPIVVVGTS PADCSHMVQT LLAMIAPLEY CAEARPYFTI HDSEFREFTQ ECSSKTTLPA 120
  121 CILGVTNPFF VKLLKDWPHM LRLVDNQKNM QQQQHLLLGQ KHARNIASAT SFSSSTELGG 180
  181 RIALKSNTNL NGSSSSSNGS GDASSAGLHS KYRPYLKKDK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [441-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALIKKVLLGM KTKRPEHVQT ALIRRHLLEL TQSFMIPLER YMASLMPLQK DISPFKSAPN  60
   61 ANSFKLDDFL GTLETAGPQL TSPLKGDWKG LYRRFFR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [538-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNFRGWYGA RHRELQLTLQ DLQLQALSVA NLEHWAHDKQ EVEIIDMILK LKQKLNLYGD  60
   61 KATQLEGNNG STQQQIRAQI ECMKGLLPPD LKNVVNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle