| Protein: | Rnp4F-PD, Rnp4F-... |
| Organism: | Drosophila melanogaster |
| Length: | 941 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rnp4F-PD, Rnp4F-....
| Description | E-value | Query Range |
Subject Range |
|
|
482.0 | [0..1] | [941..1] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MDADKQLERQ LEKELDEMPA EDLDDDAYDE YDLIVIPDQG KGSPQQGHSE SPQQEEEHKS 60
61 EELRQRSRPT WPPSSAGGDM TTIELISSDD E
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [92-644] |
1 11 21 31 41 51
| | | | | |
1 PSVEETEGGN AAGRGRARND SSSSSDDVGV IEGSELESNS EVSSDSDSDS DNAGGGNQLE 60
61 RSYQELNALP SKKFAQMVSL IGIAFKLNDL EKIESSVLEL QNLATVPAHV WLKYLKARLV 120
121 VTQTDEERKA FEEQCAKALG YYYSIPLSEY VVNYLVDQGN VQNHVLWAKL LADYDVERPD 180
181 FGDKLRSLIS TITDENEAAA FVEMLQKHCV TWTCNVEQRQ MIKSVVDKFK QHLDETTRGW 240
241 DWSEQHKAHV YDVETLSLDD DLKNAVIRFI FERSVAKFPI VDVLWLSYIE FIQFEGVTVP 300
301 ENEDENEVTA EMVAKRAKRL GKGFLRNTEL DLANRGVRSH PSVQLNHRFL DLMERSDFEL 360
361 AEVDEEIRLI LQRIVTDMDM TVELHLDYLA YRIRNTNASD EQQVASLRAA FNHAWEELTV 420
421 LYGDQADTRY EVLQLWAQVE YTQLGSPDNG REIWRQIMGY PGSSIRGLLW LNFAQMESEY 480
481 NGGHGTRDVL RKALSQPVLE NGLMVQEFFR RYERCYGTYE SIAACQALDL PVEYVKPRSR 540
541 IKPNSQSAYP RQQ
|
| Detection Method: | |
| Confidence: | 54.30103 |
| Match: | 2ooeA |
| Description: | No description for 2ooeA was found. |
| Term | Confidence | Notes |
| protein binding | 0.93235633671694 | bayes_pls_golite062009 |
| binding | 0.787280988128024 | bayes_pls_golite062009 |
|
Region A: Residues: [645-705] |
1 11 21 31 41 51
| | | | | |
1 KLKPRQQQQQ TNREPLNREQ RRRQAHEQQQ QQQQQQKHGI KKSRTEPSGG ATSPPSKVKG 60
61 P
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [706-941] |
1 11 21 31 41 51
| | | | | |
1 ANAEAKESNF KYSPNMEINK IFVRNLHPAC SKEELHELFS PFGTIKDVRL VHKLNKQFKG 60
61 IAYVEFEKPG EAQRAVAGRD GCLFKGMNIS VAISNPPPRG TSAVKPSVAP KRRVPTSLIP 120
121 TTLVRQEVAA KKLRLLLPEP GDISSTSASV DVAIKREANG EEQKGDVQER DEQKGEEQKG 180
181 EEQKGEEPKG EEQKGDDQIG EEQSGVEQKG DEKKEEEMPA AVPKSNDDFR KLFLKD
|
| Detection Method: | |
| Confidence: | 27.045757 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.06771312666314 | bayes_pls_golite062009 |
| nucleic acid binding | 2.20292754034443 | bayes_pls_golite062009 |
| binding | 1.71154446874967 | bayes_pls_golite062009 |
| mRNA binding | 1.67824071507664 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
