YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24639774, gi|...
Organism: Drosophila melanogaster
Length: 345 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24639774, gi|....

Description E-value Query
Range
Subject
Range
gi|54643960, gi|... - gi|54643960|gb|EAL32703.1| GA13751-PA [Drosophila pseudoobscura], gi|125983758|ref|XP_001355644.1| G...
146.0 [0..192] [344..1]

Back

Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDQPMSMQ NGAPPPPPSQ LTAHTIAAST VTAAPPTGSM AAPTALHYNT GMGGGIPPTS  60
   61 SAGGTAGNYV SIGILPSMSP AQLPPLLLPA PPPATTTFKT TPLLPMPTLE DIEVANQTGG 120
  121 QSGQVVVSLA QTSMAPPGIL KYPTAGGYVS DMMAPPPSLP LSMSLPHPPL TSIAGSTAGS 180
  181 NNSNISGSNM SSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNCGTLKSNA KLLPLQLMAT PPSRKEPLTP AHPQAASIQA QAQVQHQLQQ QHQQQQQQQQ  60
   61 QQHQQQQQQQ QQRQRKRQGW CSCFSSTPGG GHAGGGVGGG VAAGETGKTP PGYGSKEKKK 120
  121 SRKATSQTVW SALLTNLGIC MLLLAYTLLG KR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle