YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL30-PA
Organism:	Drosophila melanogaster
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL30-PA.

Description	E-value	Query Range	Subject Range
gi\|17946199 - gi\|17946199\|gb\|AAL49140.1\| RE56957p [Drosophila melanogaster]	311.0	[0..1]	[180..1]
gi\|125982817\|ref... - GA20051-PA [Drosophila pseudoobscura], GA20051 [Drosophila pseudoobscura pseudoobscura] gi\|54643487, gi\|... - gi\|54643487\|gb\|EAL32231.1\| GA20051 [Drosophila pseudoobscura pseudoobscura], gi\|125982817\|ref\|XP_001... gi\|194104822, gi... - gi\|195163924\|ref\|XP_002022799.1\| GL14759 [Drosophila persimilis], gi\|194104822\|gb\|EDW26865.1\| GL1475...	262.0	[0..1]	[180..1]
gi\|118785339, gi... - gi\|118785339\|ref\|XP_314555.3\| AGAP010590-PA [Anopheles gambiae str. PEST], gi\|116128037\|gb\|EAA09955.... AGAP010590-PA - Mitochondrial ribosomal protein L30\|protein_coding\|3L:6557791:6558535:-1\|gene:AGAP010590	255.0	[0..6]	[180..11]
gi\|108879940, gi... - gi\|157105988\|ref\|XP_001649114.1\| mitochondrial ribosomal protein, L30, putative [Aedes aegypti], gi\|...	210.0	[0..17]	[180..19]
gi\|114579145 - gi\|114579145\|ref\|XP_515648.2\| PREDICTED: hypothetical protein [Pan troglodytes]	180.0	[0..40]	[149..153]
RM30_RAT - 39S ribosomal protein L30, mitochondrial OS=Rattus norvegicus GN=Mrpl30 PE=1 SV=1	173.0	[0..40]	[149..46]
gi\|12652921, gi\|... - gi\|12652921\|gb\|AAH00217.1\| Mitochondrial ribosomal protein L30 [Homo sapiens], gi\|119622287\|gb\|EAX01...	173.0	[0..40]	[149..46]
gi\|148682586, gi... - gi\|148682586\|gb\|EDL14533.1\| mitochondrial ribosomal protein L30, isoform CRA_a [Mus musculus], gi\|13...	172.0	[0..40]	[149..46]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGRLLNPL RSTACSVRSY GKHNKKFLYK NGQKFEGITY YPRTPDHQDP PVEPAKLFRV  60
   61 QRIKPLKGNP YWENRILKDL GLDGKQSDFT VVKNIPENNA RLWKIKHLIK VTPVTFPYGE 120
  121 PTAQDVRHTI LKENGECLVT KDLGPIDTRL AARQDYDEQP KRLDTDLLRK DARLKWLNPW 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.75
Match:	1ffkT
Description:	Archaeal L30 (L30a)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits