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View Structure Prediction Details

Protein: CG3556-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3556-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|17861640 - gi|17861640|gb|AAL39297.1| GH17087p [Drosophila melanogaster]
484.0 [0..19] [595..19]

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Predicted Domain #1
Region A:
Residues: [1-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLSSPPWL LLLVLFFFAN GSATVVSLAE NVTLATLPST SPISVSFSTT SSVVAPISTE  60
   61 LENQTASSSN LNTNNEASDE QTGNSNSNTS SHSRNINGLP SSNSNIDNAN SNSSSVSSLS 120
  121 TTTSAISGVD QQESLILATP TALNGSGTPP EHQTIGQAPP TKGEQEAILR ALDWLKEKRA 180
  181 SDYGWGNDTH VVILAKELSG GRDPNDSVDG HVQVIQELED TLSVKEMEIE ILAMLDRHHT 240
  241 LPKPLDLDKL ARYVLALGSL CKDPKHFHGH DLVATLQHHE PAQDIEFALT TLSACSSAAH 300
  301 VRKRQIRRLL DIASGVTDQS VDAIAMVILA LRCIVTDHRH RHLQHFVRRP ARGLATLQDQ 360
  361 RGSFGSLRST ALAMQALQDL EYDPAGHWNR TAASRYILSR QRADGGWSEE PLQDGQEPDI 420
  421 GVGLTADIIL ALGWKGLGAV RALQCDHVIR ESSDPTENGE PKLAVPFGLS SSAEESDAKN 480
  481 ISYTYTLWVG SNVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.69897
Match: 1w6kA
Description: Structure of human OSC in complex with Lanosterol
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [495-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESFSLSLVSP KNTSFFKAMT QAAEMDPRFI FEAREWPNGH YVHTLYGKKE EPRGYHYWLL  60
   61 YRLPELPDPN NTPGNQLIAP VGVDELMVED GEHYLYWYKK L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 2bb5A
Description: No description for 2bb5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle