YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0298035, cib...
Organism:	Drosophila melanogaster
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0298035, cib....

Description	E-value	Query Range	Subject Range
gi\|29134779 - gi\|29134779\|dbj\|BAC66140.1\| projectin [Procambarus clarkii]	143.0	[0..2]	[127..817]
gi\|91077294 - gi\|91077294\|ref\|XP_968496.1\| PREDICTED: similar to thymosin beta isoform 1 [Tribolium castaneum]	123.0	[0..4]	[129..6]
gi\|58380946, gi\|... - gi\|58380946\|ref\|XP_310894.2\| ENSANGP00000012542 [Anopheles gambiae str. PEST], gi\|55243581\|gb\|EAA067...	121.0	[0..12]	[129..11]
gi\|221579752, gi... - gi\|95103092\|gb\|ABF51487.1\| thymosin isoform 2 [Bombyx mori], gi\|221579752\|gb\|ACM24356.1\| thymosin is...	121.0	[0..3]	[129..6]
gi\|66566395 - gi\|66566395\|ref\|XP_623926.1\| PREDICTED: similar to ciboulot CG4944-PB, isoform B [Apis mellifera]	116.0	[0..4]	[129..2]
gi\|157771452 - gi\|157771452\|ref\|XP_001677546.1\| Hypothetical protein CBG22765 [Caenorhabditis briggsae AF16] gi\|39583826, gi\|... - gi\|39583826\|emb\|CAE74899.1\| Hypothetical protein CBG22765 [Caenorhabditis briggsae], gi\|187021593\|em...	113.0	[0..6]	[127..2]
gi\|194115445, gi... - gi\|195174005\|ref\|XP_002027773.1\| GL21390 [Drosophila persimilis], gi\|194115445\|gb\|EDW37488.1\| GL2139... gi\|54642817\|gb\|E... - GA18544-PA [Drosophila pseudoobscura], GA18544 [Drosophila pseudoobscura pseudoobscura] gi\|125981003, gi... - gi\|54642817\|gb\|EAL31561.1\| GA18544 [Drosophila pseudoobscura pseudoobscura], gi\|125981003\|ref\|XP_001...	113.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAPALKD LPKVAENLKS QLEGFNQDKL KNASTQEKII LPTAEDVAAE KTQQSIFEGI  60
   61 TAFNQNNLKH TETNEKNPLP DKEAIEQEKE KNQFIAGIEN FDAKKLKHTE TNEKNVLPTK 120
  121 EVIEAEKQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits