YRC Public Data Repository - Protein Structure Prediction

Protein:	Vap-33-1-PC, FBp...
Organism:	Drosophila melanogaster
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vap-33-1-PC, FBp....

Description	E-value	Query Range	Subject Range
gi\|114672225 - gi\|114672225\|ref\|XP_512022.2\| PREDICTED: vesicle-associated membrane protein-associated protein A is... gi\|94721250 - gi\|94721250\|ref\|NP_003565.4\| vesicle-associated membrane protein-associated protein A isoform 1 [Hom...	231.0	[0..1]	[269..8]
gi\|57089795 - gi\|57089795\|ref\|XP_537332.1\| PREDICTED: similar to vesicle-associated membrane protein-associated pr...	229.0	[0..1]	[269..8]
gi\|61365583, gi\|... - gi\|61365587\|gb\|AAX42732.1\| VAMP-associated protein A [synthetic construct], gi\|61365583\|gb\|AAX42731....	224.0	[0..1]	[269..1]
VAPA_MOUSE - Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2	219.0	[0..1]	[269..8]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSLFDLPL TIEPEHELRF VGPFTRPVVT IMTLRNNSAL PLVFKIKTTA PKRYCVRPNI  60
   61 GKIIPFRSTQ VEICLQPFVY DQQEKNKHKF MVQSVLAPMD ADLSDLNKLW KDLEPEQLMD 120
  121 AKLKCVFEMP TAEANAENTS GGGAVGGGTG AAGGGSAGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	2criA
Description:	Solution structure of the MSP domain of mouse VAMP-associated proteinA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [160-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTSSASAEAL ESKPKLSSED KFKPSNLLET SESLDLLSGE IKALRECNIE LRRENLHLKD  60
   61 QITRFRSSPA VKQVNEPYAP VLAEKQIPVF YIAVAIAAAI VSLLLGKFFL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	1dipA
Description:	Delta-sleep-inducing peptide immunoreactive peptide
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits