YRC Public Data Repository - Protein Structure Prediction

Protein:	Rala-PC, Rala-PA
Organism:	Drosophila melanogaster
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rala-PC, Rala-PA.

Description	E-value	Query Range	Subject Range
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	221.0	[0..1]	[199..1]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	220.0	[0..1]	[199..1]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	220.0	[0..1]	[199..49]
gi\|61365844, gi\|... - gi\|61365844\|gb\|AAX42772.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|54695924\|gb\|AA...	219.0	[0..1]	[200..1]
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	218.0	[0..1]	[199..1]
RAB1A_PIG - Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3	218.0	[0..1]	[199..1]
gi\|53733986 - gb\|AAH83951.1\| Unknown (protein for MGC:97957) [Xenopus laevis] gi\|55741705 - ref\|NP_001003153.1\| RAB1A, member RAS oncogene family [Canis familiaris] gi\|120419448, gi... - gi\|76629653\|ref\|XP_869337.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 2 [Bos t... gi\|109103156 - gi\|109103156\|ref\|XP_001090072.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 4 [M... gi\|61355917, gi\|... - gi\|61355926\|gb\|AAX41191.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|61355917\|gb\|AA... tr\|G1TCS8\|G1TCS8... - pep:novel chromosome:oryCun2:2:121177308:121212010:1 gene:ENSOCUG00000017003 transcript:ENSOCUT00000... RAB1A - RAB1A, member RAS oncogene family RAB1A_RAT - Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3 RAB1A_CANLF - Ras-related protein Rab-1A OS=Canis lupus familiaris GN=RAB1A PE=1 SV=3 gi\|159906367 - gi\|159906367\|gb\|ABX10872.1\| RAB1A [Capra hircus] RAB1A_MOUSE - Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3 tr\|M3VYP9\|M3VYP9... - RAB1A, member RAS oncogene family OS=Felis catus GN=RAB1A PE=4 SV=1 gi\|149727528 - gi\|149727528\|ref\|XP_001493347.1\| PREDICTED: similar to RAB1A, member RAS oncogene family [Equus caba...	218.0	[0..1]	[199..1]
gi\|2144601, gi\|2... - pir\|\|TVRTYP GTP-binding protein Rab1 - rat, gi\|206553\|gb\|AAA42006.1\| ras protein	216.0	[0..1]	[199..1]
RAB1A_LYMST - Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1	216.0	[0..1]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKPTAGPA LHKVIMVGSG GVGKSALTLQ FMYDEFVEDY EPTKADSYRK KVVLDGEEVQ  60
   61 IDILDTAGQE DYAAIRDNYF RSGEGFLCVF SITDDESFQA TQEFREQILR VKNDESIPFL 120
  121 LVGNKCDLND KRKVPLSECQ LRAQQWAVPY VETSAKTREN VDKVFFDLMR EIRSRKTEDS 180
  181 KATSGRAKDR CKKRRLKCTL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2bovA
Description:	Molecular recognition of an ADP-ribosylating Clostridium botulinum C3 exoenzyme by RalA GTPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits