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View Structure Prediction Details

Protein: Gas8-PB, FBpp0311223
Organism: Drosophila melanogaster
Length: 479 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gas8-PB, FBpp0311223.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
206.0 [0..2] [479..2227]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKGKKGKK GKKLPVLIDG VDTSAMTRDQ LEAFALRLKA EMDREREERN YFQLERDKIR  60
   61 TFWEITRQQL DETRYELQQK DKEIEAT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDLADIDTKH VMQQMKHLQF ENHNRLGEVR AEAMTQLKLA QEHHVLQENE LQRDKRQLRR  60
   61 MLRERMEMSE MQLRQMEAHF NEKLLEQRIT FERERKDNEM LHEEKMIEQK AKLDLFYGTQ 120
  121 MFEVEERKNQ QIKDLQDHHD LAFNDMKNYY NDITLNNLAL IGSMKEQLEH LRKQAERSDR 180
  181 IAADTAAENR RLKEPLEHAN IQLNEYRRKL EFYERDKQQL SRLKTRNTRL EKKVKGLTWE 240
  241 AETLILRNDS LVAEREGLKE RFNDVIVELQ QKTGLKNVLL ERKIAALMRE DEKRSIVLHE 300
  301 TIATCAPNFA EKLTSLDERV GNIIDEKNKI ILDLRYEVTK ARKAHDDLLE TYECKLKQYG 360
  361 VPTDELGFKP IRNRDQQQLY VCGPAGIITE NK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.221849
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle