YRC Public Data Repository - Protein Structure Prediction

Protein:	CG14420-PA
Organism:	Drosophila melanogaster
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14420-PA.

Description	E-value	Query Range	Subject Range
gi\|13345187 - gi\|13345187\|gb\|AAK19244.1\|AF312916_1 reticulocyte binding protein 2 homolog A [Plasmodium falciparum...	121.0	[0..118]	[287..2703]
RBP2A_PLAF7 - Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=1 SV... gi\|33413772 - gi\|33413772\|gb\|AAN39443.1\| normocyte binding protein 2a [Plasmodium falciparum]	121.0	[0..118]	[287..2703]
gi\|109018984 - gi\|109018984\|ref\|XP_001099469.1\| PREDICTED: kinesin family member 21B [Macaca mulatta]	119.0	[0..25]	[288..589]
gi\|7710046, gi\|6... - gi\|7710046\|ref\|NP_057914.1\| kinesin family member 21A [Mus musculus], gi\|6561827\|gb\|AAF17083.1\|AF202...	117.0	[0..25]	[288..487]
gi\|168275526 - gi\|168275526\|dbj\|BAG10483.1\| kinesin family member 21A [synthetic construct] gi\|38569484, gi\|... - gi\|38569484\|ref\|NP_060111.2\| kinesin family member 21A [Homo sapiens], gi\|166788544\|dbj\|BAG06720.1\| ...	117.0	[0..25]	[288..487]
gi\|109482761 - gi\|109482761\|ref\|XP_001056804.1\| PREDICTED: similar to Kinesin family member 21A [Rattus norvegicus]	116.0	[0..93]	[288..893]
gi\|50761286 - gi\|50761286\|ref\|XP_419258.1\| PREDICTED: similar to kinesin family member 21B; N-5 kinesin [Gallus ga...	113.0	[0..76]	[288..915]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCLLQLSLA VALCALLAPS TTLAERRNVY RLGGRASDAQ MEARFTSSIA NKLTSLKGTT  60
   61 TTTTVAPTTT TTPTSTTETT TPTAPTTSTG TSTSTTTPTT SDTTTGR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [108-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFPAIQDDVE EDDEEMPRAF EDEEDEGDDS LEDEDDDDDE ESYFVAAPSA GGNSNAVQQS  60
   61 SESGSLVRPS ELQWRQFQQE QRNRRRIQRL QREHNQRIRS LLRRQRAAEK RSQQRLRRQR 120
  121 QQSRKRVSQR QRRNRNRSKA QRQRQRRNNM NRRRRQQQQR QRRHRQQQRR RLVRLMRRRR 180
  181 RGGRRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits