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View Structure Prediction Details

Protein: fs(1)Ya-PA
Organism: Drosophila melanogaster
Length: 696 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fs(1)Ya-PA.

Description E-value Query
Range
Subject
Range
gi|552093 - gi|552093|gb|AAA65184.1| fs(1)Ya protein [Drosophila melanogaster]
442.0 [0..1] [696..1]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSNVLIMR QPDEGKCHIC KRVFCCGKCR QKHQFKAHAI AVREPLGLRS AGGGIIEHRH  60
   61 QMESGATTIY VFCPICERRP LLLREEMHGE LLAHIETCHL PLRCRKCQRN YTRVDDLREF 120
  121 SKCVDQQQSC TDVTGATET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKATLKKAAN STAISTQTSP SVTPISLINM RWKAKSRVTH EEFISDSVSS IRNLSSFSNS  60
   61 SIRRSIGQLG VNPSETMEKG KVIRSTSTPL HVESVFAKPK EPITFNASTG GHVSSIYHEE 120
  121 PSPTPESNPV QQQQQQQQPL QQRAWKMGAR NKMSAATPLR QVMSKSIQKA FVEHGGMMVH 180
  181 QPPSAVVQRR VRLDLSEHSS HEAAGSSALD LRLSPAMRRT QS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [362-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSASEVNSG SSSSYSTSRN ADLCKRQFLL SAQKLTTESI IITRTNSSSQ KTSSTVYNSC  60
   61 ESVEIIRSTS ESAEVCHVPA ITPIRVTGAG INKKQIKFET PPKSSQQMRS NGEGDETKDQ 120
  121 FFTPEPGTPE IPERRHRQAI VPRQLSGEFS PKKDKPKEKG LAVMALISPP LQQPRVRPPL 180
  181 RECRQQRVYS GVQDVGEPEV VDAEEEDEVF RPTNASTCND KKLEAPN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [589-696]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGRLWSLMSS MMRLPASLRG EREKDRDRDR DSDKENAGSG SLIRRCASIA GSLVRPSARD  60
   61 SSMEDQQCLK RKRTQTLDSQ YCSPLSPSSS SKRYRIRPRE PIERMRRQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle