YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8636-PA
Organism:	Drosophila melanogaster
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8636-PA.

Description	E-value	Query Range	Subject Range
gi\|48734702 - gi\|48734702\|gb\|AAH71591.1\| PABPC4 protein [Homo sapiens]	175.0	[0..48]	[268..146]
gi\|114682135 - gi\|114682135\|ref\|XP_514668.2\| PREDICTED: poly(A)-binding protein, cytoplasmic 1-like [Pan troglodyte...	175.0	[0..48]	[268..146]
gi\|76689279 - gi\|76689279\|ref\|XP_881322.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	175.0	[0..48]	[268..146]
gi\|109091847 - gi\|109091847\|ref\|XP_001109542.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 [Macaca mulatta]	175.0	[0..48]	[268..146]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGVETIKSS WADEVELDYG GLPPTTETVE NGQKYVTEYK YNKDDKKTKV VRTYKISKQV  60
   61 VPKTVAKRRT WTKFGDSKND KPGPNSQTTM VSEEIIMQFL NSKEDEKAND PLLDPTKNIA 120
  121 KCRICNGEHW SVNCPYKGTA MDTNMMEKKA SAAAAAAVDA PKSGKYVPPF LKDSQKGALG 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGRDDTAAI RISNLSESMT EADLEELVKK IGPQSKMYLA RDKNTGLCKG FAYVHFKQRK  60
   61 DAAAAIEILN GHGYDHLILS VEWSKPQNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2cq0A
Description:	solution structure of RNA binding domain in eukaryotic translation initiation factor 3 subunit 4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits