YRC Public Data Repository - Protein Structure Prediction

Protein:	tko-PB
Organism:	Drosophila melanogaster
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tko-PB.

Description	E-value	Query Range	Subject Range
gi\|33575063, gi\|... - gi\|33599017\|ref\|NP_886577.1\| 30S ribosomal protein S12 [Bordetella bronchiseptica RB50], gi\|33575063...	186.0	[0..21]	[140..9]
gi\|92910094, gi\|... - gi\|92910094\|ref\|ZP_01278870.1\| Ribosomal protein S12 [Mycobacterium sp. JLS], gi\|92432182\|gb\|EAS9151... gi\|92438565, gi\|... - gi\|92917301\|ref\|ZP_01285915.1\| Ribosomal protein S12 [Mycobacterium sp. KMS], gi\|92438565\|gb\|EAS9641...	185.0	[0..27]	[140..132]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	184.0	[0..26]	[140..9]
gi\|6691839 - gi\|6691839\|emb\|CAB65721.1\| technical knockout protein [Drosophila melanogaster]	183.0	[0..1]	[140..1]
gi\|68536933, gi\|... - gi\|68536933\|ref\|YP_251638.1\| 30S ribosomal protein S12 [Corynebacterium jeikeium K411], gi\|68264532\|...	183.0	[0..17]	[140..46]
gi\|60117171, gi\|... - gi\|60139438\|ref\|YP_209614.1\| ribosomal protein S12 [Huperzia lucidula], gi\|60117171\|ref\|YP_209505.1\|...	183.0	[0..30]	[140..1]
gi\|48855325 - gi\|48855325\|ref\|ZP_00309484.1\| COG0048: Ribosomal protein S12 [Cytophaga hutchinsonii] RS12_CYTH3 - 30S ribosomal protein S12 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsL PE=3 SV...	182.0	[0..30]	[140..1]
RS12_THEEB - 30S ribosomal protein S12 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsL PE=3 SV=1 RS12_SYNEL - 30S ribosomal protein S12 OS=Synechococcus elongatus GN=rpsL PE=3 SV=1	182.0	[0..30]	[140..1]
RS12_RALPJ - 30S ribosomal protein S12 OS=Ralstonia pickettii (strain 12J) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum GN=rpsL PE=3 SV=1 gi\|207744582, gi... - gi\|207744582\|ref\|YP_002260974.1\| 30s ribosomal protein s12 [Ralstonia solanacearum IPO1609], gi\|2065... gi\|206587073, gi... - gi\|207721904\|ref\|YP_002252342.1\| 30s ribosomal protein s12 [Ralstonia solanacearum MolK2], gi\|206587... gi\|83749346, gi\|... - gi\|83749346\|ref\|ZP_00946342.1\| SSU ribosomal protein S12P [Ralstonia solanacearum UW551], gi\|8372397... gi\|241664537, gi... - gi\|241664537\|ref\|YP_002982897.1\| ribosomal protein S12 [Ralstonia pickettii 12D], gi\|240866564\|gb\|AC...	182.0	[0..30]	[140..1]
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	182.0	[0..18]	[140..7]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLRQSFGI TKQLASQAIQ CSYETAVRGM ASLQQMHRSG PHIKTRPPRQ PLDGKPFAKG  60
   61 VVLKTLIKKP KKPNSANRKC VLVRLSTGKE MVAYIPGIGH NLQEHNIVLC RVGRLQDVPG 120
  121 VKLKAVRGVY DLAHVVKKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2f4vL
Description:	No description for 2f4vL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits