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View Structure Prediction Details

Protein: crn-PA
Organism: Drosophila melanogaster
Length: 702 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn-PA.

Description E-value Query
Range
Subject
Range
gi|73670079, gi|... - gi|73670079|ref|YP_306094.1| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi|...
381.0 [0..6] [700..220]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPQKMPKV AKVKNKAPAE VQITAEQLLR EAKERDLEIL PPPPKQKISD PAELADYQQR  60
   61 KRKTFEDNLR KNRMVVSHWI KYAQWEEQQQ EIQRARSIWE RALDNEHRNV TLWLKYAEME 120
  121 MKNKQVNHAR NLWDRAVTIM PRVNQFWYKY TYMEEMLENV AGARQVFERW MEWQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [176-702]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQAWQTYVN FELRYKEIDR AREIYERFVY VHPDVKNWIK FARFEESHGF IHGSRRVFER  60
   61 AVEFFGDDYI EERLFIAFAR FEEGQKEHDR ARIIYKYALD HLPKDRTQEL FKAYTKHEKK 120
  121 YGDRAGIEDV IVSKRKYQYE QEVAANPTNY DAWFDYLRLI EAEGDRDQIR ETYERAISNV 180
  181 PPANEKNFWR RYIYLWINYA LYEELEAEDA ERTRQIYKTC LELIPHKQFT FSKLWLLYAQ 240
  241 FEIRCKELQR ARKALGLAIG MCPRDKLFRG YIDLEIQLRE FERCRMLYEK FLEFGPENCV 300
  301 TWMKFAELEN LLGDTDRARA IFELAVQQPR LDMPELLWKA YIDFEVALGE TELARQLYER 360
  361 LLERTQHVKV WMSFAKFEMG LSHGDSGPDA ELNVQLARRI YERANEMLRQ LGDKESRVLL 420
  421 LEAWRDFERD ASDSQEMQKV MDKMPRRIKK RQKIVSDNGV EEGWEEVFDY IFPEDEMARP 480
  481 NLKLLAAAKM WKTQKDNTVD DPPATAIASE PEPAADAAPA DTTDSGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 2gw1A
Description: No description for 2gw1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle