| Protein: | usp-PA, FBpp0305937 |
| Organism: | Drosophila melanogaster |
| Length: | 508 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp-PA, FBpp0305937.
| Description | E-value | Query Range |
Subject Range |
|
|
331.0 | [0..1] | [499..1] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MDNCDQDASF RLSHIKEEVK PDISQLNDSN NSSFSPKAES PVPFMQAMSM VHVLPGSNSA 60
61 SSNNNSAGDA QMAQAPNSAG GSAAAAVQQQ YPPNHPLSG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-206] |
1 11 21 31 41 51
| | | | | |
1 SKHLCSICGD RASGKHYGVY SCEGCKGFFK RTVRKDLTYA CRENRNCIID KRQRNRCQYC 60
61 RYQKCLTCGM KREAVQEERQ RGARNAAGRL SASGGGSSGP GSVGGSS
|
| Detection Method: | |
| Confidence: | 22.0 |
| Match: | 1ynwB |
| Description: | Crystal Structure of Vitmain D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-508] |
1 11 21 31 41 51
| | | | | |
1 SQGGGGGGGV SGGMGSGNGS DDFMTNSVSR DFSIERIIEA EQRAETQCGD RALTFLRVGP 60
61 YSTVQPDYKG AVSALCQVVN KQLFQMVEYA RMMPHFAQVP LDDQVILLKA AWIELLIANV 120
121 AWCSIVSLDD GGAGGGGGGL GHDGSFERRS PGLQPQQLFL NQSFSYHRNS AIKAGVSAIF 180
181 DRILSELSVK MKRLNLDRRE LSCLKAIILY NPDIRGIKSR AEIEMCREKV YACLDEHCRL 240
241 EHPGDDGRFA QLLLRLPALR SISLKCQDHL FLFRITSDRP LEELFLEQLE APPPPGLAMK 300
301 LE
|
| Detection Method: | |
| Confidence: | 41.69897 |
| Match: | 1hg4A |
| Description: | Ultraspiracle protein, usp |
Matching Structure (courtesy of the PDB): |
|
