YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL16-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL16-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|109132846 - gi\|109132846\|ref\|XP_001089131.1\| PREDICTED: similar to ribosomal protein L10 [Macaca mulatta]	273.0	[0..27]	[238..56]
gi\|74212071 - gi\|74212071\|dbj\|BAE40200.1\| unnamed protein product [Mus musculus]	272.0	[0..29]	[238..1]
gi\|167045820 - gi\|167045820\|gb\|ABZ10488.1\| ribosomal protein L10 (predicted) [Callithrix jacchus] gi\|226955351 - gi\|226955351\|gb\|ACO95346.1\| ribosomal protein L10 (predicted) [Dasypus novemcinctus] RL10_PAPAN - 60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1 gi\|170649634 - gi\|170649634\|gb\|ACB21221.1\| ribosomal protein L10 (predicted) [Callicebus moloch] RPL10 - ribosomal protein L10 gi\|51980562 - gb\|AAH82196.1\| Unknown (protein for MGC:98731) [Xenopus laevis] RL10_MOUSE - 60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=1 SV=3 RL10_RAT - 60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3 gi\|190576574 - gi\|190576574\|gb\|ACE79064.1\| 60S ribosomal protein L10 (predicted) [Sorex araneus] tr\|F7AYR2\|F7AYR2... - Uncharacterized protein OS=Equus caballus OX=9796 GN=RPL10 PE=4 SV=1 gi\|74008842, gi\|... - gi\|74008842\|ref\|XP_867641.1\| PREDICTED: similar to ribosomal protein L10 isoform 7 [Canis familiaris... ENSMMUT000000077... - null, null	272.0	[0..29]	[238..1]
gi\|60834521 - gi\|60834521\|gb\|AAX37098.1\| ribosomal protein L10 [synthetic construct]	272.0	[0..29]	[240..1]
RPL10 - ribosomal protein L10 gi\|60654969, gi\|... - gi\|60654969\|gb\|AAX32048.1\| ribosomal protein L10 [synthetic construct], gi\|117645498\|emb\|CAL38215.1\|...	270.0	[0..29]	[238..1]
RL10_SHEEP - 60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1 RL10_BOVIN - 60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4 RL10_PIG - 60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=1 SV=3 gi\|51814392 - gi\|51814392\|gb\|AAU09485.1\| GekBS044P [Gekko japonicus]	270.0	[0..29]	[238..1]
gi\|187609306 - gi\|187609306\|pdb\|2ZKR\|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... gi\|4929242, gi\|2... - gi\|4929242\|gb\|AAD33912.1\|AF143815_1 ribosomal protein [Bos taurus], gi\|27807465\|ref\|NP_777185.1\| rib...	269.0	[0..29]	[238..1]
RL10_PONPY - 60S ribosomal protein L10 - Pongo pygmaeus (Orangutan) RL10_PONAB - 60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3	269.0	[0..29]	[238..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLKLVSQL FKQSLASGNM AIVNTAGLKY FAPPIKYQNV EQPERPKLRV IERQPQLPPN  60
   61 IRPPKMQKRL RYMRGPEMVH NTLLHKQYAI VATGGGRLRW GHYEMMRLTI GRKMNVNTMF 120
  121 ATWRVPAPWQ PITKKGQGQR MGGGKGAIDH YVTPIKAGRV IVEIAGKCEF VEVKQFLQQV 180
  181 ANQLPFQATV VSQEMLDEQR VAEEEQTRQN ENPFTMKYVI QNNLSGCHRW LSPVDHKWFG 240
  241 KHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	2ftcI
Description:	No description for 2ftcI was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits