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View Structure Prediction Details

Protein: Vps26-PA
Organism: Drosophila melanogaster
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vps26-PA.

Description E-value Query
Range
Subject
Range
gi|7511856, gi|2... - pir||T12683 embryogenesis protein H beta 58 homolog - fruit fly (Drosophila melanogaster), gi|2832...
505.0 [0..1] [478..1]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFLGFGQSA DIEIVFDGAE HKTAEVKGED GKVEKMLLFY DGETVSGKVN VTLKKPGSKL  60
   61 EHQGIKIEFI GQIELYYDRG NHHEFKCLAK ALARPGDLIQ NNSYPFDFPK VEKQFEVYAG 120
  121 SNVRLRYFLR ATIVRRISDI TKEVDIAVHT LCSYPEMNNP IKMEVGIEDC LHIEFEYNKS 180
  181 KYHLRDTIIG KIYFLLVRIK IKHMEIAIIK KESTGTGPTM FNENETIAKY EIMDGAPVKG 240
  241 ESIPIRVFLA GYNLTPTMRD INKKFSVKYF LNLVLMDTED RRYFKQQEIT LWRKADKPRY 300
  301 HGAQQHQQQQ HQHVPLHAPP HLVSGPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 133.0
Match: 2fauA
Description: No description for 2fauA was found.

Predicted Domain #2
Region A:
Residues: [328-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APTVAHSLIS SSTDSGEVGG APTAPGTAGS ESKMGLFTRE SPNQEFSQQQ MDSPPLTPTP  60
   61 STASVAVAVP TAASSVSEPA PERGIGDGAA AATTSASPVA MLSSSPPPLL PVSPLSRSET 120
  121 EASEQVQPED EDLDAITPNT KKTGATPLAT D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle