YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3719-PA
Organism:	Drosophila melanogaster
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3719-PA.

Description	E-value	Query Range	Subject Range
TRXM1_ARATH - Thioredoxin M1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=2 SV=1	141.0	[0..1]	[153..33]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	138.0	[0..17]	[153..12]
gi\|68245554, gi\|... - gi\|69260198\|ref\|ZP_00607905.1\| Thioredoxin [Magnetococcus sp. MC-1], gi\|68245554\|gb\|EAN27674.1\| Thio...	137.0	[0..12]	[156..19]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	136.0	[0..17]	[153..12]
TRXM_BRANA - Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1	134.0	[0..2]	[154..30]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	133.0	[0..47]	[153..2]
gi\|15594012 - gi\|15594012\|emb\|CAC69854.1\| putative thioredoxin m2 [Pisum sativum]	133.0	[0..18]	[153..44]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIAAEGIA PRLAAACCSI GAKSRGQRMA PQAARGTQKY LSQSQHLHKM LVIKDHYEFD  60
   61 QKVINSDNPV IVNFHAEWCD PCKILTPKML ELLENSNEID LAVIDVETNL DLVETFEVKA 120
  121 VPAVLAFRNG VVVDKFIGLV DANSIETLID KLKRKQQQKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.09691
Match:	1uvzA
Description:	structure of human thioredoxin 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits