YRC Public Data Repository - Protein Structure Prediction

Protein:	MED22-PA
Organism:	Drosophila melanogaster
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED22-PA.

Description	E-value	Query Range	Subject Range
gi\|125775295, gi... - gi\|54638640\|gb\|EAL28042.1\| GA21670-PA [Drosophila pseudoobscura], gi\|125775295\|ref\|XP_001358899.1\| G...	207.0	[0..1]	[142..1]
MED22_BOVIN - Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1	199.0	[0..10]	[129..7]
gi\|148725474, gi... - gi\|50344944\|ref\|NP_001002144.1\| mediator complex subunit 22 [Danio rerio], gi\|47939383\|gb\|AAH71397.1...	199.0	[0..5]	[143..2]
gi\|73967578 - gi\|73967578\|ref\|XP_537799.2\| PREDICTED: similar to Surfeit locus protein 5 isoform 1 [Canis familiar...	198.0	[0..10]	[143..7]
gi\|31652218, gi\|... - gi\|5803183\|ref\|NP_006743.1\| surfeit 5 isoform a [Homo sapiens], gi\|55958178\|emb\|CAI12828.1\| surfeit ... gi\|60822577 - gi\|60822577\|gb\|AAX36614.1\| surfeit 5 [synthetic construct]	198.0	[0..10]	[143..7]
ENSCJAT00000035050 - null gi\|109109904 - gi\|109109904\|ref\|XP_001101486.1\| PREDICTED: similar to Surfeit locus protein 5 isoform 2 [Macaca mul... gi\|55632551 - gi\|55632551\|ref\|XP_528453.1\| PREDICTED: similar to SURF-5 protein [Pan troglodytes]	198.0	[0..10]	[143..7]
gi\|149039244 - gi\|149039244\|gb\|EDL93464.1\| similar to surfeit 5 isoform b (predicted), isoform CRA_b [Rattus norveg... MED22_MOUSE, SUR... - Surfeit locus protein 5 - Mus musculus (Mouse), (Q62276) Surfeit locus protein 5, Mediator of RNA po... tr\|G3I9S4\|G3I9S4... - Mediator of RNA polymerase II transcription subunit 22 OS=Cricetulus griseus GN=I79_020333 PE=4 SV=1	198.0	[0..10]	[143..7]
gi\|2826824 - gi\|2826824\|emb\|CAA75447.1\| surfeit protein 5 [Takifugu rubripes]	198.0	[0..9]	[143..6]
MED22_RAT - Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1	198.0	[0..10]	[129..7]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGSRTTIL PQSKEALLKS YNARLKDDVR SMLENFEEIL KLARRESHSQ ISKTTQCEQD  60
   61 ALEMQVRAAN MVRAGESLMK LVADLKQYLI LNDFHSVNEA ITNNSQLFRN TQSECDKKLM 120
  121 KLRDEMAMDL YDLEEEYYTS IFK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	90.0
Match:	PF06179.3
Description:	No description for PF06179.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.985	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits