YRC Public Data Repository - Protein Structure Prediction

Protein:	Sec22-PA
Organism:	Drosophila melanogaster
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sec22-PA.

Description	E-value	Query Range	Subject Range
gi\|108870699, gi... - gi\|94468992\|gb\|ABF18345.1\| vesicle trafficking protein SEC22 [Aedes aegypti], gi\|157133826\|ref\|XP_00...	223.0	[0..1]	[211..1]
AGAP012717-PA - vesicle transport protein SEC22\|protein_coding\|UNKN:24915268:24916389:-1\|gene:AGAP012717 gi\|55246527, gi\|... - gi\|58375833\|ref\|XP_307637.2\| Anopheles gambiae str. PEST AGAP012717-PA [Anopheles gambiae str. PEST]...	221.0	[0..1]	[211..1]
gi\|66513815 - gi\|66513815\|ref\|XP_396838.2\| PREDICTED: similar to CG7359-PA [Apis mellifera]	213.0	[0..1]	[211..1]
gi\|125980927\|ref... - GA20293-PA [Drosophila pseudoobscura], GA20293 [Drosophila pseudoobscura pseudoobscura] gi\|195162387, gi... - gi\|195162387\|ref\|XP_002022037.1\| GL14202 [Drosophila persimilis], gi\|194103935\|gb\|EDW25978.1\| GL1420... gi\|125980927, gi... - gi\|54642791\|gb\|EAL31536.1\| GA20293 [Drosophila pseudoobscura pseudoobscura], gi\|125980927\|ref\|XP_001...	211.0	[0..1]	[211..1]
gi\|115496488, gi... - gi\|74354583\|gb\|AAI02343.1\| SEC22 vesicle trafficking protein homolog B (S. cerevisiae) [Bos taurus],...	210.0	[0..1]	[206..1]
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	209.0	[0..10]	[211..9]
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2	209.0	[0..10]	[202..6]
gi\|91080669 - gi\|91080669\|ref\|XP_975087.1\| PREDICTED: similar to snare protein sec22 [Tribolium castaneum]	209.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLTMIARV IDGLPLVGTM QDDEQSGRSI LDYQNQAKML FRKLGTHSPA RCSIETGPYL  60
   61 FHYLIENDVC YLVMVDKMYS KRLAFNYLED LAQEFHANYG RRVNSVTRPY AFIEFDVYIQ 120
  121 KAKKQLTDRR RNISNINTQL QDVQRIMVQN IDDVLQRGTV LAELDTKTQN LSMMSQKYKK 180
  181 DAKLLNRKSM YVKAMALGMI LLVFIMYFWV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	2nupC
Description:	No description for 2nupC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits