YRC Public Data Repository - Protein Structure Prediction

Protein:	RpL22-PA
Organism:	Drosophila melanogaster
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpL22-PA.

Description	E-value	Query Range	Subject Range
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	160.0	[0..180]	[299..3]
gi\|112984292, gi... - gi\|54609235\|gb\|AAV34833.1\| ribosomal protein L22 [Bombyx mori], gi\|112984292\|ref\|NP_001037225.1\| rib...	158.0	[0..154]	[299..2]
PRP2_MEDTR - Repetitive proline-rich cell wall protein 2 OS=Medicago truncatula GN=PRP2 PE=2 SV=1	140.0	[0..2]	[252..66]
gi\|82581111 - gi\|82581111\|emb\|CAJ43592.1\| proline-rich protein precursor [Phaseolus vulgaris]	136.0	[0..2]	[236..28]
RPL22L1 - ribosomal protein L22-like 1	133.0	[0..180]	[299..3]
gi\|8096255 - gi\|8096255\|dbj\|BAA96106.1\| TrPRP2 [Trifolium repens]	132.0	[0..2]	[252..46]
gi\|38103670, gi\|... - gi\|39944186\|ref\|XP_361630.1\| hypothetical protein MGG_04104 [Magnaporthe grisea 70-15], gb\|EAA50345....	131.0	[0..176]	[298..2]
gi\|50752478 - gi\|50752478\|ref\|XP_422795.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Gallus gallus]	131.0	[0..178]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTAKTNKG DTKTAAAKPA EKKAAPAAAA AKGKVEKPKA EAAKPAAAAA KNVKKASEAA  60
   61 KDVKAAAAAA KPAAAKPAAA KPAAASKDAG KKAPAAAAPK KDAKAAAAPA PAKAAPAKKA 120
  121 ASTPAAAPPA KKAAPAKAAA PAAAAPAPAA AAPAVAKPAP KPKAKAAPAP SKVVKKNVLR 180
  181 GK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKKKKVSLR FTIDCTNIAE DSIMDVADFE KYIKARLKVN GKVNNLGNNV TFERSKLKLI  60
   61 VSSDVHFSKA YLKYLTKKYL KKNSLRDWIR VVANEKDSYE LRYFRISSND DEDDDAE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.79588
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.794	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.747	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.745	N/A	N/A	d.58.10	Acylphosphatase-like
View	Download	0.694	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.670	N/A	N/A	d.137.1	Monooxygenase (hydroxylase) regulatory protein

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits