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View Structure Prediction Details

Protein: CG4293-PB, CG429...
Organism: Drosophila melanogaster
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4293-PB, CG429....

Description E-value Query
Range
Subject
Range
ERGI3_DANRE - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
473.0 [0..13] [376..2]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATLRYRGD KSNLLEFAKN LDAFKKVPEK YTETSEIGGT LSLLSRLLIV YLVYTELHYY  60
   61 WHETDIVYQF EPDIALDEQV QMHVDITVAM PCASLSGVDL MDETQQDVFA YGTLQREGVW 120
  121 WEMSEHDR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQFQAIQIQN HYLREEFHSV ADVLFKDIMR DNHPARESAS KAPAAPPPGA LPLSVDLHGR  60
   61 HNVQPESKFD ACRLHGTLGI NKVAGVLHLV GGAQPVVGLF EDHWMIELRR MPANFTHRIN 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSFGQYSGRI VQPLEGDEIV IHEEATTVQY FLKVVPTEIH QTFTTIYAFQ YAVTENVRKL  60
   61 DSERNSYGSP GIYFKYDWSA LKIIVRNDRD HLVTFAIRLC SIISGIIVIS GAINALLLSI 120
  121 RSRLLRTFAP VLYNRLTRAK AAAPDAPSLS SLSAKAGTAP PVNELLHTAN LMASVDISAY 180
  181 LPTTPPKLQA GL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle