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View Structure Prediction Details

Protein: CG32000-PD
Organism: Drosophila melanogaster
Length: 658 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG32000-PD.

Description E-value Query
Range
Subject
Range
gi|25013140 - gi|25013140|gb|AAN71683.1| SD17880p [Drosophila melanogaster]
541.0 [0..64] [650..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASQSKACD SPSETVHLQS LPNHIEDLKF RNSDVETDDD LHFPGIAAKN KILKLSWWHS  60
   61 PVDMHYVATE SVQPKKSDKV PSNKIKKVEN NNTLVNGCSK TSARSVPLLK YNRPDQDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSEENITSVL EPNVDEIYSK DSERLVDDSK PCIGLLNPDQ EDQMKVCGYR RSLMRTGFCW  60
   61 ACIFLTGGLL RLVLHWWRHL YLYATCSQCS LEEAEQVLVT EDYQGKHKMY HVKQIQVLTS 120
  121 SNLKTLLEKE QQSIERTHIE CDHVENVLQL SVHFTSAQFK KCSSIRIFRC KQLVYAWNNN 180
  181 TNRFQRI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [306-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGLDLNIPCS YYHQQRGLPV HEQISRRIVF GDNEITVPLR DFKTLLFLEV LNPFYVFQLF  60
   61 SVILWFTYDY YYYACVILLM SVFGITVSVL QTKKNQDVLQ KTVYNTGNAW VVDHKGLSKE 120
  121 LPTRAIVPGD IIEIPSSGCT LHCDAILISG NCILDESMLT GESVPVTKTP LPSKRDMIFD 180
  181 KTEHARHTLF CGTKVIQTRY IGSKKVLAFV INTGNITAKG ELIRSILYPP PVDYKFEQDS 240
  241 YKFIQFLAII ACVGFIYTLV TKILRGTDPV KIAVESLDLI TIVVPPALPA AMTVGRFYAQ 300
  301 KRLKTSEIFC ISPRSINVAG SINCCCFDKI LKYSILRERR ERAILAVTKK VSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.39794
Match: 1iwoA
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle