YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL32-PA
Organism:	Drosophila melanogaster
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL32-PA.

Description	E-value	Query Range	Subject Range
gi\|54637671\|gb\|E... - GA11487-PA [Drosophila pseudoobscura], GA11487 [Drosophila pseudoobscura pseudoobscura] gi\|54637671, gi\|... - gi\|54637671\|gb\|EAL27073.1\| GA11487 [Drosophila pseudoobscura pseudoobscura], gi\|125773357\|ref\|XP_001...	276.0	[0..1]	[195..1]
gi\|58381512, gi\|... - gi\|58381512\|ref\|XP_311295.2\| ENSANGP00000017581 [Anopheles gambiae str. PEST], gi\|55243095\|gb\|EAA068...	261.0	[0..1]	[191..1]
MRPL32 - mitochondrial ribosomal protein L32	222.0	[0..3]	[174..21]
gi\|114613028 - gi\|114613028\|ref\|XP_528025.2\| PREDICTED: mitochondrial ribosomal protein L32 [Pan troglodytes]	221.0	[0..3]	[174..21]
gi\|109066747 - gi\|109066747\|ref\|XP_001097622.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Macaca m...	217.0	[0..3]	[174..21]
gi\|157775379 - gi\|157775379\|ref\|XP_001665755.1\| hypothetical protein CBG18131 [Caenorhabditis briggsae AF16] gi\|39591673, gi\|... - gi\|39591673\|emb\|CAE71251.1\| Hypothetical protein CBG18131 [Caenorhabditis briggsae], gi\|187025168\|em...	208.0	[0..9]	[178..9]
RM32_BOVIN - 39S ribosomal protein L32, mitochondrial OS=Bos taurus GN=MRPL32 PE=2 SV=1	204.0	[0..3]	[174..21]
gi\|109505037, gi... - gi\|109505870\|ref\|XP_001054992.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Rattus n...	201.0	[0..14]	[174..101]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNLFLSIT NFIRNLESLF LPHGGHPPAL ALAGFQHDHS PKSSQEFSLK QLIGDGLLWA  60
   61 VPKHRRSVEK RLKRKFGYPE YNWKPLREKR NLRSCLQCGH DHEMGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.30103
Match:	1j5aM
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1409163233998	bayes_pls_golite062009
structural molecule activity	9.56329613896852	bayes_pls_golite062009
binding	1.16610062824298	bayes_pls_golite062009
protein binding	0.226001959714381	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [107-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCPFCYQKVL KETELMQSKI QETLGLDPVD KEVIVLYEGE KAEQSTDDLK NKRIVEMKKP  60
   61 RPMWFTKNLL QKSTQQLSET KEVKPSDLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.681	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.458	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.439	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.370	N/A	N/A	c.44.2	Enzyme IIB-cellobiose
View	Download	0.345	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: