YRC Public Data Repository - Protein Structure Prediction

Protein:	CG1746-PA, CG174...
Organism:	Drosophila melanogaster
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1746-PA, CG174....

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	158.0	[0..1]	[137..140]
gi\|73996376 - gi\|73996376\|ref\|XP_534788.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	143.0	[0..1]	[137..112]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	139.0	[0..16]	[137..201]
AT5G1_RAT - ATP synthase F(0) complex subunit C1, mitochondrial OS=Rattus norvegicus GN=Atp5g1 PE=1 SV=1	138.0	[0..1]	[137..1]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	138.0	[0..1]	[137..58]
gi\|85794840, gi\|... - gi\|85794840\|ref\|NP_005167.2\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 iso... gi\|114644458 - gi\|114644458\|ref\|XP_509102.2\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex, su...	137.0	[0..1]	[137..58]
gi\|190627775, gi... - gi\|194744513\|ref\|XP_001954738.1\| GF16589 [Drosophila ananassae], gi\|190627775\|gb\|EDV43299.1\| GF16589... gi\|193891937, gi... - gi\|195062153\|ref\|XP_001996145.1\| GH14335 [Drosophila grimshawi], gi\|193891937\|gb\|EDV90803.1\| GH14335... gi\|125772503\|ref... - GA14517-PA [Drosophila pseudoobscura], GA14517 [Drosophila pseudoobscura pseudoobscura] gi\|194117140, gi... - gi\|195159000\|ref\|XP_002020371.1\| GL13949 [Drosophila persimilis], gi\|194117140\|gb\|EDW39183.1\| GL1394... gi\|125772503, gi... - gi\|54637296\|gb\|EAL26698.1\| GA14517 [Drosophila pseudoobscura pseudoobscura], gi\|125772503\|ref\|XP_001...	136.0	[0..1]	[138..1]
gi\|74204278 - gi\|74204278\|dbj\|BAE39897.1\| unnamed protein product [Mus musculus]	135.0	[0..1]	[137..1]
gi\|56417588 - gi\|56417588\|gb\|AAV90735.1\| mitochondrial ATP synthase lipid binding protein precursor [Aedes albopic...	135.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVSTVSRIA PVARSAFLAN SKQYLRPLSS AIISQSQTLA AQNTTPVALL PQIRSFQTSP  60
   61 VTRDIDSAAK FIGAGAATVG VAGSGAGIGT VFGSLIIGYA RNPSLKQQLF SYAILGFALS 120
  121 EAMGLFCLMM AFLLLFAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits