YRC Public Data Repository - Protein Structure Prediction

Protein:	CG2246-PC, CG2246-PE
Organism:	Drosophila melanogaster
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG2246-PC, CG2246-PE.

Description	E-value	Query Range	Subject Range
gi\|194905326, gi... - gi\|194905326\|ref\|XP_001981174.1\| GG11922 [Drosophila erecta], gi\|190655812\|gb\|EDV53044.1\| GG11922 [D... CG2246-PA, CG2246-PH - This gene is referred to in FlyBase by the symbol Dmel\CG2246 (CG2246, FBgn0039790). It is a protein... gi\|195505234, gi... - gi\|195505234\|ref\|XP_002099416.1\| GE23373 [Drosophila yakuba], gi\|194185517\|gb\|EDW99128.1\| GE23373 [D... gi\|194131498, gi... - gi\|195341576\|ref\|XP_002037382.1\| GM12142 [Drosophila sechellia], gi\|194131498\|gb\|EDW53541.1\| GM12142...	376.0	[0..1]	[386..21]

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Predicted Domain #1

Region A:
Residues: [1-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTSTSDIV IINGNSHPDL ANMVAERMGI KNGGCSVFHK SNRETIVEIS DSVRGKDIYI  60
   61 IQTGTKDANN NIMELLIMAY ACKTSSARSI VGVIPYLPYS KQCKMRKRGC IVSKLLAKMM 120
  121 CTSGLTHIIT MDLHQKEIQG FFDIPVDNLR ASPFLLQYIQ ESIPDYRNSV IVARNPGVAK 180
  181 KANSYAERLR LGLAVIHGEQ KETDADEVDG RYSPPPTSAY SNLLGNSVEM CLPATPRNST 240
  241 PQHAPTSSAR QRTTSVSVGV PEHIVKVKPP LTIVGDVSGR IAIMVDDLID DVQAFVAAAE 300
  301 MLKENGACKI YVLATHGLLS SDAPRQLDES PIDEIVVTNT IPHEIQKLQC HKIKTIDISI 360
  361 LIAEAIRRIH NKESMSYLFR NVTLED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.045757
Match:	2ji4A
Description:	No description for 2ji4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits