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View Structure Prediction Details

Protein: CG1972-PA
Organism: Drosophila melanogaster
Length: 597 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1972-PA.

Description E-value Query
Range
Subject
Range
gi|56204955 - gi|56204955|emb|CAI23177.1| cleavage and polyadenylation specific factor 3-like [Homo sapiens]
481.0 [0..1] [595..28]

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Predicted Domain #1
Region A:
Residues: [1-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDIKITPLG AGQDVGRSCL LLSMGGKNIM LDCGMHMGYN DERRFPDFSY IVPEGPITSH  60
   61 IDCVIISHFH LDHCGALPYM SEIVGYTGPI YMTHPTKAIA PILLEDMRKV AVERKGESNF 120
  121 FTTQMIKDCM KKVIPVTLHQ SMMVDTDLEI KAYYAGHVLG AAMFWIKVGS QSVVYTGDYN 180
  181 MTPDRHLGAA WIDKCRPDLL ISESTYATTI RDSKRCRERD FLKKVHECVA KGGKVLIPVF 240
  241 ALGRAQELCI LLETYWERMN LKYPIYFALG LTEKANTYYK MFITWTNQKI RKTFVHRNMF 300
  301 DFKHIKPFDK AYIDNPGAMV VFATPGMLHA GLSLQIFKKW APNENNMVIM PGYCVQGTVG 360
  361 NKILGGAKKV EFENRQVVEV KMAVEYMSFS AHADAKGIMQ LIQNCEPKNV MLVHGEAGKM 420
  421 KFLRSKIKDE FNLETYMPAN GETCVISTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.39794
Match: 2i7tA
Description: No description for 2i7tA was found.

Predicted Domain #2
Region A:
Residues: [450-597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKIPVDASVS LLKAEARSYN AQPPDPKRRR LIHGVLVMKD NRIMLQNLTD ALKEIGINRH  60
   61 VMRFTSKVKM DDSGPVIRTS ERLKTLLEEK LAGWTVTMQE NGSIAIESVE VKVEEDEKDP 120
  121 KQKNILISWT NQDEDIGAYI LNVLQNMC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle