YRC Public Data Repository - Protein Structure Prediction

Protein:	Slbp-PA
Organism:	Drosophila melanogaster
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Slbp-PA.

Description	E-value	Query Range	Subject Range
gi\|10334683 - gi\|10334683\|gb\|AAG16723.1\|AF186594_1 histone mRNA stem-loop binding protein [Drosophila melanogaster...	276.0	[0..1]	[267..1]
cdl-1 - status:Confirmed UniProt:Q09599 protein_id:CAA86782.1	226.0	[0..13]	[276..21]
gi\|157751148 - gi\|157751148\|ref\|XP_001679286.1\| Hypothetical protein CBG03013 [Caenorhabditis briggsae AF16] gi\|187036944, gi... - gi\|39597377\|emb\|CAE59605.1\| Hypothetical protein CBG03013 [Caenorhabditis briggsae], gi\|187036944\|em...	223.0	[0..13]	[273..36]
SLBP_MOUSE - Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1	219.0	[0..59]	[263..21]
gi\|189442753, gi... - gi\|195976798\|ref\|NP_001124460.1\| stem-loop binding protein [Rattus norvegicus], gi\|189442753\|gb\|AAI6...	216.0	[0..59]	[263..21]
gi\|73951400 - gi\|73951400\|ref\|XP_545928.2\| PREDICTED: similar to stem-loop binding protein isoform 4 [Canis famili...	205.0	[0..51]	[263..13]
gi\|114053069, gi... - gi\|82571711\|gb\|AAI10147.1\| Histone stem loop binding protein [Bos taurus], gi\|114053069\|ref\|NP_00103...	204.0	[0..51]	[263..13]
SLBP1_XENLA - Histone RNA hairpin-binding protein OS=Xenopus laevis GN=slbp1 PE=1 SV=1	203.0	[0..48]	[263..3]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCEDQHMSV ENTPQKGSGS LNSSASSISI DVKPTMQSWA QEVRAEFGHS DEASSSLNSS  60
   61 AASCGSLAKK ETADGNLESK DGEGREMAFE FLDGVNEVKF ERLVKEEKLK TPYKRRHSFT 120
  121 PPSNENSRSN SPNSSNSSAN GDAAAPKGGN NPHSRNSKKS GNFRAHKEEK RVRHNSYTSS 180
  181 TSSSSSYT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EADPAILSRR QKQIDYGKNT AAYERYVEMV PKDERTRDHP RTPNKYGKYS RRAFDGLVKI  60
   61 WRKSLHIYDP PTQARDTAKD SNSDSDSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits