YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG14516-PA, FBpp...
Organism: Drosophila melanogaster
Length: 990 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14516-PA, FBpp....

Description E-value Query
Range
Subject
Range
CG14516-PB - This gene is referred to in FlyBase by the symbol Dmel\CG14516 (CG14516, FBgn0039640). It is a prote...
862.0 [0..1] [990..10]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKEIPLHE NLNMESRPMN AATPTTTTTF SKGGRRYSVS LTTAILLASF FICTLLAVGF  60
   61 IVYNFATCAE LEPDSDEDVV CTSYHLRRLK AGHDDTPKYD RDV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-990]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLPHSIRPLK YNITIEPQLS GNFTFAGSVQ IRIRVLEDCY NITMHAEELN ISRSDASVHR  60
   61 VQNNGEPEGD GLRIHKQYLV GAKQFFVIEL YDKLLKDVEY VVHLRFDGII EDYLQGFYRS 120
  121 SYEVHNETRW VASTQFQATD ARRAFPCFDE PALKANFTLH IARPRNMTTI SNMPIVSSND 180
  181 HATMPSYVWD HFAESLPMST YLVAYAISDF THISSGNFAV WARADAIKSA EYALSVGPRI 240
  241 LTFLQDFFNV TFPLPKIDMI ALPEFQAGAM ENWGLITFRE TAMLYDPGVA TANNKQRVAS 300
  301 VVGHELAHQW FGNLVTPSWW SDIWLNEGFA SYMEYLTADA VAPEWKQLDQ FVVNELQAVF 360
  361 QLDALSTSHK ISHEVFNPQE ISEIFDRISY AKGSTIIRMM AHFLTNPIFR RGLSKYLQEM 420
  421 AYNSATQDDL WHFLTVEAKS SGLLDDSRSV KEIMDTWTLQ TGYPVVKVSR HPNSDVIRLE 480
  481 QVRFVYTNTT REDESLLWYI PITFTTDSEL NFANTRPTTW MPRTKLYELE NRELSLAKWF 540
  541 IFNVQQTGYY RVNYDLENWM AITEHLMDVD NFEDIAPANR AQLIDDVMNL ARGSYLSYET 600
  601 AMNLTRYLGH ELGHVPWKAA ISNFIFIDSM FVNSGDYDLL KNYLLKQLKK VYDQVGFKDS 660
  661 QDESEDILVK LKRADILSMA CHLGHQECIA EASRHFQNWM QTPNPDSNNP IVPNLRGVVY 720
  721 CSAIQYGTEY EWDFAFERFL KTNVPGEKDL LLNALGCSKE PWLLYRFLRR GISGQHIRKQ 780
  781 DLFRVFAAVS TTVVGQNIAF DFLRNNWQEI KTYMGSQMSS IHTLFKFATK GFNSKFQLGE 840
  841 FENFVKDAHW DYDRPVQQIV EHIETSVDWM NKNYKSIVRW LENEAQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.0
Match: 1z1wA
Description: Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle