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View Structure Prediction Details

Protein: Ssl2-PA
Organism: Drosophila melanogaster
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ssl2-PA.

Description E-value Query
Range
Subject
Range
gi|54638043, gi|... - gi|54638043|gb|EAL27445.1| GA17412-PA [Drosophila pseudoobscura], gi|125774097|ref|XP_001358307.1| G...
264.0 [0..1] [409..1]

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Predicted Domain #1
Region A:
Residues: [1-65]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLAALLKT SLFLVLFLGS LFLLPVLYPS TTFPFEQYFI KPARDLNGTL ELNNHLNGAR  60
   61 KLWKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.09691
Match: 1v04A
Description: serum paraoxonase by directed evolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [66-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIFGPECLIV LEDKIYTGIH SGEVIRLNNE ESVQPITKIG QPCDYIFDDE LCGYPVGLAL  60
   61 DTQGNNLIVS DAYYGIWQVD LETKKKTVLV PAEQILPGKG ANRRAKLFNS LVISRQGDIF 120
  121 WTDSFSEDFV FAAFANPSGR YDRVKKTNEV LLDELSFANG LALSPSEDFI ILAETTAMRL 180
  181 RRYYLKGSRA GESEVFVEGL PGCPDNLTAD EEGIWVPLSV ASDSQNPNLF AVLAPYPRLR 240
  241 SFLARLVALM RLPLRVLNHI YPNDIAARLF HSFNDLVIRN APKRSTVVRV DWNGNIVRSL 300
  301 HGFDRSASGI SHVLEVKGHL YLGSPFNHYV AKVKLPEEGL KSVKGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1nr0A
Description: Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.407313201902664 bayes_pls_golite062009
protein binding 0.0109071915022965 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle