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View Structure Prediction Details

Protein: CG9990-PB
Organism: Drosophila melanogaster
Length: 777 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9990-PB.

Description E-value Query
Range
Subject
Range
CG9990-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9990 (CG9990, FBgn0039594). It is a protein...
556.0 [0..4] [777..35]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISTISTDS AMAATNNDGG TQPNAVAAWG APANGPRNTQ AAVSVRHAFK AYGKKKNANQ  60
   61 VLNNLNMTVP KGTIYGLLGA SGCGKTTLLS CIVGRRYMDA GEIFVLGGKP GTRGSGVPGK 120
  121 RVGYMPQEIA LYGEFSIQET MMYFGWIFGM DTKEILERLQ FLLNFLDLPS EKRLVKNLSG 180
  181 GQQRRVSFAV ALMHDPELLI LDEPTVGVDP LLRQSIWNHL VHITKAGQKT VIITTHYIEE 240
  241 ARQAHTIGLM RSGHLLAEES PSVLLSIYKC ISLEEVFLKL SRIQSQKGDV THVNFSNNIS 300
  301 LHAMAFGSKM DKPSSSQEGG VVGLNFHQSK EVLINDSNGS IYTLNQEPYS PPPSRRNNNP 360
  361 NDEESCQDCY SNLCKITSKG KIRALLTKNM LRM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [394-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRNVGVMLFI FALPVMQVIL FCLAIGRDPQ GLNLAIVNGE MNDTVRENCY WEDGCHFKNL  60
   61 GCRYLSHLNT SVVKTYYEDL DDAKEAVRKG TAWGAVYI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [492-777]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENFTDAFIA RANLGRDSDD ETIDSSEVKV WLDMSNQQIG VMLNRDIQLA FRDFAMGLLG  60
   61 QCGSNPKLGD VPIQFRDPIY GTMNPSFTDF VAPGVILTIV FFLAVALTSS ALIIERTEGL 120
  121 LDRSWVAGVS PFEILFSHVI TQFVVMCGQT TLVLIFMLVV FGVTNNGDLF WVIVLTLLQG 180
  181 MCGMCFGFLI SSVCELERNA IQLALGSFYP TLLLSGVIWP IEGMPVVLRY ISLCLPLTLA 240
  241 TSSLRSILTR GWAILESDVY IGYVSTLSWI VGFLVLTLLV LRAKRG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle